RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 POLR2AP24928 1970 aaKnown RBP13.85□□□□□ -0.19
SYNE2-221ENST00000556342 ZNF853P0CG23 659 aa13.85□□□□□ -0.19
SYNE2-221ENST00000556342 FKBP1BP68106 108 aa13.85□□□□□ -0.19
SYNE2-221ENST00000556342 CCDC85AQ96PX6 553 aaPredicted RBP13.85□□□□□ -0.19
SYNE2-221ENST00000556342 MYOZ2Q9NPC6 264 aa13.85□□□□□ -0.19
SYNE2-221ENST00000556342 XDHP47989 1333 aa13.85□□□□□ -0.19
SYNE2-221ENST00000556342 PDE4DIPQ5VU43 2346 aa13.85□□□□□ -0.19
SYNE2-221ENST00000556342 USP17L3A6NCW0 530 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 USP17L4A6NCW7 530 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 USP17L8P0C7I0 530 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 ATP2B4P23634 1241 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 PDE4AP27815 886 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 SOX10P56693 466 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 DSG2Q14126 1118 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 USP17L1Q7RTZ2 530 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 PODNQ7Z5L7 613 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 ANKRD18AQ8IVF6 992 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 JARID2Q92833 1246 aaPredicted RBP13.84□□□□□ -0.19
SYNE2-221ENST00000556342 IFT57Q9NWB7 429 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 CWC25Q9NXE8 425 aaPredicted RBP13.84□□□□□ -0.19
SYNE2-221ENST00000556342 PITPNM2Q9BZ72 1349 aa13.84□□□□□ -0.19
SYNE2-221ENST00000556342 ELL2O00472 640 aaPredicted RBP13.83□□□□□ -0.2
SYNE2-221ENST00000556342 CTU1Q7Z7A3 348 aaKnown RBP13.83□□□□□ -0.2
SYNE2-221ENST00000556342 PLPP6Q8IY26 295 aa13.83□□□□□ -0.2
SYNE2-221ENST00000556342 METTL22Q9BUU2 404 aaPredicted RBP13.83□□□□□ -0.2
SYNE2-221ENST00000556342 PAPPA2Q9BXP8 1791 aa13.82□□□□□ -0.2
SYNE2-221ENST00000556342 GNAI1P63096 354 aa13.82□□□□□ -0.2
SYNE2-221ENST00000556342 DDX10Q13206 875 aaKnown RBP13.82□□□□□ -0.2
SYNE2-221ENST00000556342 DDX58O95786 925 aaKnown RBP13.81□□□□□ -0.2
SYNE2-221ENST00000556342 CTSWP56202 376 aa13.81□□□□□ -0.2
SYNE2-221ENST00000556342 CALD1Q05682 793 aaKnown RBP13.81□□□□□ -0.2
SYNE2-221ENST00000556342 MOB2Q70IA6 237 aa13.81□□□□□ -0.2
SYNE2-221ENST00000556342 C8orf58Q8NAV2 365 aa13.81□□□□□ -0.2
SYNE2-221ENST00000556342 CDC5LQ99459 802 aaKnown RBP13.81□□□□□ -0.2
SYNE2-221ENST00000556342 SCAF8Q9UPN6 1271 aaKnown RBP13.81□□□□□ -0.2
SYNE2-221ENST00000556342 MED23Q9ULK4 1368 aa13.81□□□□□ -0.2
SYNE2-221ENST00000556342 WTIPA6NIX2 430 aaPredicted RBP13.8□□□□□ -0.2
SYNE2-221ENST00000556342 UBE2Q2LH0YL09 131 aa13.8□□□□□ -0.2
SYNE2-221ENST00000556342 NBPF9Q3BBW0 867 aa13.8□□□□□ -0.2
SYNE2-221ENST00000556342 ARSIQ5FYB1 569 aa13.8□□□□□ -0.2
SYNE2-221ENST00000556342 PRAMEF18Q5VWM3 479 aa13.8□□□□□ -0.2
SYNE2-221ENST00000556342 BSDC1Q9NW68 430 aaPredicted RBP13.8□□□□□ -0.2
SYNE2-221ENST00000556342 MAP3K2Q9Y2U5 619 aa13.8□□□□□ -0.2
SYNE2-221ENST00000556342 AKAP11Q9UKA4 1901 aa13.8□□□□□ -0.2
SYNE2-221ENST00000556342 PSME4Q14997 1843 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 FAM205CA6NFA0 338 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 APAF1O14727 1248 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 DACT2Q5SW24 774 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 CDAN1Q8IWY9 1227 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 TTLL11Q8NHH1 800 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 MXD3Q9BW11 206 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 MINPP1Q9UNW1 487 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 HPS5Q9UPZ3 1129 aa13.79□□□□□ -0.2
SYNE2-221ENST00000556342 WNT10BO00744 389 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 IGKV5-2P06315 115 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 PKN2Q16513 984 aaKnown RBP13.78□□□□□ -0.2
SYNE2-221ENST00000556342 STRIP1Q5VSL9 837 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 OGFOD1Q8N543 542 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 ZNF296Q8WUU4 475 aaPredicted RBP13.78□□□□□ -0.2
SYNE2-221ENST00000556342 HS3ST6Q96QI5 342 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 CHMP4AQ9BY43 222 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 GREM2Q9H772 168 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 MYO3BQ8WXR4 1341 aa13.78□□□□□ -0.2
SYNE2-221ENST00000556342 PI4KAP2A4QPH2 592 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 TBC1D8O95759 1140 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 CCT4P50991 539 aaKnown RBP13.77□□□□□ -0.21
SYNE2-221ENST00000556342 TTLL12Q14166 644 aaPredicted RBP13.77□□□□□ -0.21
SYNE2-221ENST00000556342 PPP1R15BQ5SWA1 713 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 KSR2Q6VAB6 950 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 PI4KAP1Q8N8J0 262 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 PTCD2Q8WV60 388 aaKnown RBP13.77□□□□□ -0.21
SYNE2-221ENST00000556342 FBXW7Q969H0 707 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 COA1Q9GZY4 146 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 HDAC9Q9UKV0 1011 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 PCDHGA4Q9Y5G9 962 aa13.77□□□□□ -0.21
SYNE2-221ENST00000556342 NF2P35240 595 aa13.76□□□□□ -0.21
SYNE2-221ENST00000556342 TM4SF4P48230 202 aa13.76□□□□□ -0.21
SYNE2-221ENST00000556342 NOM1Q5C9Z4 860 aaKnown RBP13.76□□□□□ -0.21
SYNE2-221ENST00000556342 TSPYL6Q8N831 410 aa13.76□□□□□ -0.21
SYNE2-221ENST00000556342 POTEB3A0JP26 581 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 NEURL1BA8MQ27 555 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 GPR25O00155 361 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 SASH1O94885 1247 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 MMP14P50281 582 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 NEXNQ0ZGT2 675 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 MFSD10Q14728 455 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 CWF19L2Q2TBE0 894 aaKnown RBP13.75□□□□□ -0.21
SYNE2-221ENST00000556342 PRPF38BQ5VTL8 546 aaKnown RBP13.75□□□□□ -0.21
SYNE2-221ENST00000556342 POTEBQ6S5H4 581 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 TXNRD3Q86VQ6 643 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 PRKRIP1Q9H875 184 aaPredicted RBP13.75□□□□□ -0.21
SYNE2-221ENST00000556342 LEMD3Q9Y2U8 911 aa13.75□□□□□ -0.21
SYNE2-221ENST00000556342 IGHMBP2P38935 993 aaKnown RBP13.74□□□□□ -0.21
SYNE2-221ENST00000556342 PTPN12Q05209 780 aaKnown RBP13.74□□□□□ -0.21
SYNE2-221ENST00000556342 SREBF2Q12772 1141 aa13.74□□□□□ -0.21
SYNE2-221ENST00000556342 ARMC9Q7Z3E5 817 aa13.74□□□□□ -0.21
SYNE2-221ENST00000556342 UBE3BQ7Z3V4 1068 aa13.74□□□□□ -0.21
SYNE2-221ENST00000556342 KHSRPQ92945 711 aaKnown RBP eCLIP13.74□□□□□ -0.21
SYNE2-221ENST00000556342 LARP6Q9BRS8 491 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms