RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-215	ENST00000554656	IL1R1	P14778	569 aa		13.4	□□□□□ -0.26
SHMT2-215	ENST00000554656	PTPN12	Q05209	780 aa	Known RBP	13.4	□□□□□ -0.26
SHMT2-215	ENST00000554656	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.4	□□□□□ -0.26
SHMT2-215	ENST00000554656	SUCLG2	Q96I99	432 aa		13.4	□□□□□ -0.26
SHMT2-215	ENST00000554656	FZD1	Q9UP38	647 aa		13.4	□□□□□ -0.26
SHMT2-215	ENST00000554656	JAG2	Q9Y219	1238 aa		13.4	□□□□□ -0.26
SHMT2-215	ENST00000554656	COL1A1	P02452	1464 aa	Predicted RBP	13.4	□□□□□ -0.26
SHMT2-215	ENST00000554656	ALDH1L1	O75891	902 aa		13.39	□□□□□ -0.27
SHMT2-215	ENST00000554656	MMP14	P50281	582 aa		13.39	□□□□□ -0.27
SHMT2-215	ENST00000554656	MKRN3	Q13064	507 aa	Known RBP	13.39	□□□□□ -0.27
SHMT2-215	ENST00000554656	PRKG1	Q13976	671 aa		13.39	□□□□□ -0.27
SHMT2-215	ENST00000554656	TTLL12	Q14166	644 aa	Predicted RBP	13.39	□□□□□ -0.27
SHMT2-215	ENST00000554656	MTMR14	Q8NCE2	650 aa		13.39	□□□□□ -0.27
SHMT2-215	ENST00000554656	HDAC9	Q9UKV0	1011 aa		13.39	□□□□□ -0.27
SHMT2-215	ENST00000554656		F8W031	263 aa	Predicted RBP	13.38	□□□□□ -0.27
SHMT2-215	ENST00000554656	PLIN1	O60240	522 aa		13.38	□□□□□ -0.27
SHMT2-215	ENST00000554656	LDLRAD1	Q5T700	205 aa		13.38	□□□□□ -0.27
SHMT2-215	ENST00000554656	SLC4A10	Q6U841	1118 aa		13.38	□□□□□ -0.27
SHMT2-215	ENST00000554656	LDHAL6A	Q6ZMR3	332 aa		13.38	□□□□□ -0.27
SHMT2-215	ENST00000554656	ZNF804A	Q7Z570	1209 aa		13.38	□□□□□ -0.27
SHMT2-215	ENST00000554656	PUS3	Q9BZE2	481 aa	Known RBP	13.38	□□□□□ -0.27
SHMT2-215	ENST00000554656	CLRN2	A0PK11	232 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	SPDYE2B	A6NHP3	402 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	SPDYE6	P0CI01	402 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	NF2	P35240	595 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	FKBP1A	P62942	108 aa	Known RBP	13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	MLLT1	Q03111	559 aa	Predicted RBP	13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	DLGAP5	Q15398	846 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	CCDC57	Q2TAC2	916 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	CFAP100	Q494V2	611 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	REM2	Q8IYK8	340 aa	Predicted RBP	13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	SRCIN1	Q9C0H9	1055 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	DEFB129	Q9H1M3	183 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	CNNM1	Q9NRU3	951 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	UTY	O14607	1347 aa		13.37	□□□□□ -0.27
SHMT2-215	ENST00000554656	TBC1D8	O95759	1140 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	TM4SF4	P48230	202 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	TAF7L	Q5H9L4	462 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	ARMC9	Q7Z3E5	817 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	CTU1	Q7Z7A3	348 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	MRPL50	Q8N5N7	158 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	ANKRD44	Q8N8A2	993 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	PRMT6	Q96LA8	375 aa	Predicted RBP	13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	R3HDML	Q9H3Y0	253 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	ANGEL1	Q9UNK9	670 aa	Known RBP	13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	PDE4DIP	Q5VU43	2346 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	FAM205A	Q6ZU69	1335 aa		13.36	□□□□□ -0.27
SHMT2-215	ENST00000554656	MYH13	Q9UKX3	1938 aa		13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	GYG1	P46976	350 aa		13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	RABL6	Q3YEC7	729 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	SPRYD7	Q5W111	196 aa		13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	TDRD7	Q8NHU6	1098 aa	Known RBP	13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	CLMN	Q96JQ2	1002 aa		13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	BICC1	Q9H694	974 aa	Known RBP	13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	RIPOR2	Q9Y4F9	1068 aa		13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	HTT	P42858	3142 aa		13.35	□□□□□ -0.27
SHMT2-215	ENST00000554656	SOX10	P56693	466 aa		13.34	□□□□□ -0.27
SHMT2-215	ENST00000554656	UBE4A	Q14139	1066 aa		13.34	□□□□□ -0.27
SHMT2-215	ENST00000554656	GRIK5	Q16478	980 aa		13.34	□□□□□ -0.27
SHMT2-215	ENST00000554656	MAP3K11	Q16584	847 aa		13.34	□□□□□ -0.27
SHMT2-215	ENST00000554656	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.34	□□□□□ -0.27
SHMT2-215	ENST00000554656	FAM84B	Q96KN1	310 aa	Predicted RBP	13.34	□□□□□ -0.27
SHMT2-215	ENST00000554656	GJA5	P36382	358 aa		13.33	□□□□□ -0.28
SHMT2-215	ENST00000554656	LRRC24	Q50LG9	513 aa		13.33	□□□□□ -0.28
SHMT2-215	ENST00000554656	CDAN1	Q8IWY9	1227 aa		13.33	□□□□□ -0.28
SHMT2-215	ENST00000554656	VGLL2	Q8N8G2	317 aa		13.33	□□□□□ -0.28
SHMT2-215	ENST00000554656	PPP2R3B	Q9Y5P8	575 aa		13.33	□□□□□ -0.28
SHMT2-215	ENST00000554656	GPR25	O00155	361 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	HIBADH	P31937	336 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	SPDYE2	Q495Y8	402 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	NOM1	Q5C9Z4	860 aa	Known RBP	13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	MFSD14B	Q5SR56	506 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	KLHDC4	Q8TBB5	520 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	SSH1	Q8WYL5	1049 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	WNK4	Q96J92	1243 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	CFHR5	Q9BXR6	569 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	VEZT	Q9HBM0	779 aa		13.32	□□□□□ -0.28
SHMT2-215	ENST00000554656	SREBF2	Q12772	1141 aa		13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	RASA3	Q14644	834 aa		13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	FBXO33	Q7Z6M2	555 aa		13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	TEPSIN	Q96N21	525 aa		13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	ZNF70	Q9UC06	446 aa	Predicted RBP	13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	TTF2	Q9UNY4	1162 aa	Known RBP	13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	HPS5	Q9UPZ3	1129 aa		13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	MROH5	Q6ZUA9	1318 aa		13.31	□□□□□ -0.28
SHMT2-215	ENST00000554656	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656	MYO1B	O43795	1136 aa		13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656	USP2	O75604	605 aa	Predicted RBP	13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656	RBM5	P52756	815 aa	Known RBP eCLIP	13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656	SLC10A4	Q96EP9	437 aa		13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656	USP44	Q9H0E7	712 aa		13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656	TDRD3	Q9H7E2	651 aa	Known RBP	13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656	PTPRC	P08575	1304 aa		13.3	□□□□□ -0.28
SHMT2-215	ENST00000554656		E9PSI1	815 aa		13.29	□□□□□ -0.28
SHMT2-215	ENST00000554656	PPP1R12B	O60237	982 aa	Predicted RBP	13.29	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms