RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 SLFN5Q08AF3 891 aa16.5■□□□□ 0.23
RTN3-213ENST00000543552 ARMC9Q7Z3E5 817 aa16.5■□□□□ 0.23
RTN3-213ENST00000543552 SSH1Q8WYL5 1049 aa16.5■□□□□ 0.23
RTN3-213ENST00000543552 ZBED3Q96IU2 234 aaPredicted RBP16.5■□□□□ 0.23
RTN3-213ENST00000543552 BICC1Q9H694 974 aaKnown RBP16.5■□□□□ 0.23
RTN3-213ENST00000543552 PPP2R3BQ9Y5P8 575 aa16.5■□□□□ 0.23
RTN3-213ENST00000543552 AKAP11Q9UKA4 1901 aa16.49■□□□□ 0.23
RTN3-213ENST00000543552 CT47B1P0C2W7 299 aaPredicted RBP16.49■□□□□ 0.23
RTN3-213ENST00000543552 HIBADHP31937 336 aaKnown RBP16.49■□□□□ 0.23
RTN3-213ENST00000543552 RABL6Q3YEC7 729 aaPredicted RBP16.49■□□□□ 0.23
RTN3-213ENST00000543552 SCAF8Q9UPN6 1271 aaKnown RBP16.49■□□□□ 0.23
RTN3-213ENST00000543552 UBE2Q2LH0YL09 131 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 PRAMEF18Q5VWM3 479 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 VPS37DQ86XT2 251 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 CERS5Q8N5B7 392 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 KAZALD1Q96I82 304 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 CSRNP1Q96S65 589 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 SMC4Q9NTJ3 1288 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 RNF186Q9NXI6 227 aa16.48■□□□□ 0.23
RTN3-213ENST00000543552 FAM205AQ6ZU69 1335 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 ECM29Q5VYK3 1845 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 SPDYE2BA6NHP3 402 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 F8W031 263 aaPredicted RBP16.47■□□□□ 0.23
RTN3-213ENST00000543552 TRPA1O75762 1119 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 SPDYE6P0CI01 402 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 CFAP100Q494V2 611 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 METTL24Q5JXM2 366 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 DEFB129Q9H1M3 183 aa16.47■□□□□ 0.23
RTN3-213ENST00000543552 CASP8AP2Q9UKL3 1982 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 CCER2I3L3R5 266 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 RBM5P52756 815 aaKnown RBP eCLIP16.46■□□□□ 0.23
RTN3-213ENST00000543552 DGKZQ13574 1117 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 CAVIN4Q5BKX8 364 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 MFSD14BQ5SR56 506 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 MOB2Q70IA6 237 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 TDRD7Q8NHU6 1098 aaKnown RBP16.46■□□□□ 0.23
RTN3-213ENST00000543552 MCOLN1Q9GZU1 580 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 RIPOR2Q9Y4F9 1068 aa16.46■□□□□ 0.23
RTN3-213ENST00000543552 PPP1R12BO60237 982 aaPredicted RBP16.45■□□□□ 0.22
RTN3-213ENST00000543552 FRAT2O75474 233 aaPredicted RBP16.45■□□□□ 0.22
RTN3-213ENST00000543552 GYG1P46976 350 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 SREBF2Q12772 1141 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 TNFAIP1Q13829 316 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 SUPT20HL1Q3ZLR7 823 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 ANKRD44Q8N8A2 993 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 FAM84BQ96KN1 310 aaPredicted RBP16.45■□□□□ 0.22
RTN3-213ENST00000543552 PUS3Q9BZE2 481 aaKnown RBP16.45■□□□□ 0.22
RTN3-213ENST00000543552 SERPINA10Q9UK55 444 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 HDAC5Q9UQL6 1122 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 ARAP2Q8WZ64 1704 aa16.45■□□□□ 0.22
RTN3-213ENST00000543552 UNCXA6NJT0 531 aa16.44■□□□□ 0.22
RTN3-213ENST00000543552 CCDC85CA6NKD9 419 aa16.44■□□□□ 0.22
RTN3-213ENST00000543552 TBC1D22AQ8WUA7 517 aa16.44■□□□□ 0.22
RTN3-213ENST00000543552 USP44Q9H0E7 712 aa16.44■□□□□ 0.22
RTN3-213ENST00000543552 VEZTQ9HBM0 779 aa16.44■□□□□ 0.22
RTN3-213ENST00000543552 ANGEL1Q9UNK9 670 aaKnown RBP16.44■□□□□ 0.22
RTN3-213ENST00000543552 TTF2Q9UNY4 1162 aaKnown RBP16.44■□□□□ 0.22
RTN3-213ENST00000543552 JAG2Q9Y219 1238 aa16.44■□□□□ 0.22
RTN3-213ENST00000543552 KIF16BQ96L93 1317 aa16.44■□□□□ 0.22
RTN3-213ENST00000543552 CLRN2A0PK11 232 aa16.43■□□□□ 0.22
RTN3-213ENST00000543552 PDE8BO95263 885 aa16.43■□□□□ 0.22
RTN3-213ENST00000543552 PRKG1Q13976 671 aa16.43■□□□□ 0.22
RTN3-213ENST00000543552 PUM3Q15397 648 aaKnown RBP16.43■□□□□ 0.22
RTN3-213ENST00000543552 IFIT1P09914 478 aaKnown RBP16.42■□□□□ 0.22
RTN3-213ENST00000543552 UBTFL1P0CB47 393 aaPredicted RBP16.42■□□□□ 0.22
RTN3-213ENST00000543552 PTPN12Q05209 780 aaKnown RBP16.42■□□□□ 0.22
RTN3-213ENST00000543552 LRRC24Q50LG9 513 aa16.42■□□□□ 0.22
RTN3-213ENST00000543552 LDLRAD1Q5T700 205 aa16.42■□□□□ 0.22
RTN3-213ENST00000543552 FBXO33Q7Z6M2 555 aa16.42■□□□□ 0.22
RTN3-213ENST00000543552 TRMT2AQ8IZ69 625 aaKnown RBP16.42■□□□□ 0.22
RTN3-213ENST00000543552 CDCA7LQ96GN5 454 aa16.42■□□□□ 0.22
RTN3-213ENST00000543552 PRMT6Q96LA8 375 aaPredicted RBP16.42■□□□□ 0.22
RTN3-213ENST00000543552 API5Q9BZZ5 524 aaKnown RBP16.42■□□□□ 0.22
RTN3-213ENST00000543552 IREB2P48200 963 aaKnown RBP16.41■□□□□ 0.22
RTN3-213ENST00000543552 TM4SF4P48230 202 aa16.41■□□□□ 0.22
RTN3-213ENST00000543552 MAP3K11Q16584 847 aa16.41■□□□□ 0.22
RTN3-213ENST00000543552 VGLL2Q8N8G2 317 aa16.41■□□□□ 0.22
RTN3-213ENST00000543552 SLC10A4Q96EP9 437 aa16.41■□□□□ 0.22
RTN3-213ENST00000543552 ZBTB48P10074 688 aaPredicted RBP16.4■□□□□ 0.22
RTN3-213ENST00000543552 TNNI2P48788 182 aa16.4■□□□□ 0.22
RTN3-213ENST00000543552 INHBEP58166 350 aa16.4■□□□□ 0.22
RTN3-213ENST00000543552 RASA3Q14644 834 aa16.4■□□□□ 0.22
RTN3-213ENST00000543552 SPDYE2Q495Y8 402 aa16.4■□□□□ 0.22
RTN3-213ENST00000543552 FBXO3Q9UK99 471 aa16.4■□□□□ 0.22
RTN3-213ENST00000543552 MAST3O60307 1309 aa16.4■□□□□ 0.22
RTN3-213ENST00000543552 MANSC4A6NHS7 340 aaPredicted RBP16.39■□□□□ 0.21
RTN3-213ENST00000543552 EYA2O00167 538 aa16.39■□□□□ 0.21
RTN3-213ENST00000543552 ALDH1A1P00352 501 aa16.39■□□□□ 0.21
RTN3-213ENST00000543552 SLC5A1P13866 664 aa16.39■□□□□ 0.21
RTN3-213ENST00000543552 HDLBPQ00341 1268 aaKnown RBP16.39■□□□□ 0.21
RTN3-213ENST00000543552 MKRN3Q13064 507 aaKnown RBP16.39■□□□□ 0.21
RTN3-213ENST00000543552 CHAF1AQ13111 956 aaPredicted RBP16.39■□□□□ 0.21
RTN3-213ENST00000543552 NOM1Q5C9Z4 860 aaKnown RBP16.39■□□□□ 0.21
RTN3-213ENST00000543552 SPRYD7Q5W111 196 aa16.39■□□□□ 0.21
RTN3-213ENST00000543552 CTU1Q7Z7A3 348 aaKnown RBP16.39■□□□□ 0.21
RTN3-213ENST00000543552 DZIP1LQ8IYY4 767 aaKnown RBP16.39■□□□□ 0.21
RTN3-213ENST00000543552 KLHDC4Q8TBB5 520 aa16.39■□□□□ 0.21
RTN3-213ENST00000543552 SUGT1Q9Y2Z0 365 aa16.39■□□□□ 0.21
RTN3-213ENST00000543552 PCDHAC2Q9Y5I4 1007 aa16.39■□□□□ 0.21
RTN3-213ENST00000543552 SSC5DA1L4H1 1573 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms