RNA–Protein interactions for RNA: ENST00000531043.1

HIF3A-214, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-214ENST00000531043 ANKRD18BA2A2Z9 1011 aa16.97■□□□□ 0.31
HIF3A-214ENST00000531043 VAMP4O75379 141 aa16.97■□□□□ 0.31
HIF3A-214ENST00000531043 DLGAP5Q15398 846 aa16.97■□□□□ 0.31
HIF3A-214ENST00000531043 NOM1Q5C9Z4 860 aaKnown RBP16.97■□□□□ 0.31
HIF3A-214ENST00000531043 ZNF594Q96JF6 807 aaPredicted RBP16.97■□□□□ 0.31
HIF3A-214ENST00000531043 MYH16Q9H6N6 1097 aa16.97■□□□□ 0.31
HIF3A-214ENST00000531043 SALL2Q9Y467 1007 aaPredicted RBP16.97■□□□□ 0.31
HIF3A-214ENST00000531043 MKI67P46013 3256 aaKnown RBP16.97■□□□□ 0.31
HIF3A-214ENST00000531043 IL16Q14005 1332 aa16.96■□□□□ 0.31
HIF3A-214ENST00000531043 FKTNO75072 461 aa16.96■□□□□ 0.31
HIF3A-214ENST00000531043 SREBF2Q12772 1141 aa16.96■□□□□ 0.31
HIF3A-214ENST00000531043 CFAP100Q494V2 611 aa16.96■□□□□ 0.31
HIF3A-214ENST00000531043 FBXO46Q6PJ61 603 aaPredicted RBP16.96■□□□□ 0.31
HIF3A-214ENST00000531043 C15orf52Q6ZUT6 534 aaKnown RBP16.96■□□□□ 0.31
HIF3A-214ENST00000531043 PRMT6Q96LA8 375 aaPredicted RBP16.96■□□□□ 0.31
HIF3A-214ENST00000531043 CFHR5Q9BXR6 569 aa16.96■□□□□ 0.31
HIF3A-214ENST00000531043 IGF2BP3O00425 579 aaKnown RBP eCLIP16.95■□□□□ 0.3
HIF3A-214ENST00000531043 IL1R1P14778 569 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 GJA5P36382 358 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 MMP14P50281 582 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 EXOSC9Q06265 439 aaKnown RBP16.95■□□□□ 0.3
HIF3A-214ENST00000531043 BEND3Q5T5X7 828 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 NBPF12Q5TAG4 269 aaPredicted RBP16.95■□□□□ 0.3
HIF3A-214ENST00000531043 MTMR14Q8NCE2 650 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 SLC10A4Q96EP9 437 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 CHMP3Q9Y3E7 222 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 CENPFP49454 3210 aa16.95■□□□□ 0.3
HIF3A-214ENST00000531043 SPDYE2BA6NHP3 402 aa16.94■□□□□ 0.3
HIF3A-214ENST00000531043 PLIN1O60240 522 aa16.94■□□□□ 0.3
HIF3A-214ENST00000531043 SPDYE6P0CI01 402 aa16.94■□□□□ 0.3
HIF3A-214ENST00000531043 IFIT5Q13325 482 aaKnown RBP16.94■□□□□ 0.3
HIF3A-214ENST00000531043 MAP3K11Q16584 847 aa16.94■□□□□ 0.3
HIF3A-214ENST00000531043 LMBR1LQ6UX01 489 aa16.94■□□□□ 0.3
HIF3A-214ENST00000531043 IFNL1Q8IU54 200 aa16.94■□□□□ 0.3
HIF3A-214ENST00000531043 WNK4Q96J92 1243 aa16.94■□□□□ 0.3
HIF3A-214ENST00000531043 SPINK5Q9NQ38 1064 aaPredicted RBP16.94■□□□□ 0.3
HIF3A-214ENST00000531043 COL1A1P02452 1464 aaPredicted RBP16.93■□□□□ 0.3
HIF3A-214ENST00000531043 LAMB1P07942 1786 aa16.93■□□□□ 0.3
HIF3A-214ENST00000531043 CAP1Q01518 475 aa16.93■□□□□ 0.3
HIF3A-214ENST00000531043 PRPF38BQ5VTL8 546 aaKnown RBP16.93■□□□□ 0.3
HIF3A-214ENST00000531043 CDAN1Q8IWY9 1227 aa16.93■□□□□ 0.3
HIF3A-214ENST00000531043 VEZTQ9HBM0 779 aa16.93■□□□□ 0.3
HIF3A-214ENST00000531043 OTOFQ9HC10 1997 aa16.93■□□□□ 0.3
HIF3A-214ENST00000531043 MANSC4A6NHS7 340 aaPredicted RBP16.92■□□□□ 0.3
HIF3A-214ENST00000531043 USP2O75604 605 aaPredicted RBP16.91■□□□□ 0.3
HIF3A-214ENST00000531043 ZNF804AQ7Z570 1209 aa16.91■□□□□ 0.3
HIF3A-214ENST00000531043 TRIM17Q9Y577 477 aa16.91■□□□□ 0.3
HIF3A-214ENST00000531043 PPP1R12BO60237 982 aaPredicted RBP16.9■□□□□ 0.3
HIF3A-214ENST00000531043 FKBP1AP62942 108 aaKnown RBP16.9■□□□□ 0.3
HIF3A-214ENST00000531043 RASA3Q14644 834 aa16.9■□□□□ 0.3
HIF3A-214ENST00000531043 GRIK5Q16478 980 aa16.9■□□□□ 0.3
HIF3A-214ENST00000531043 OTOP1Q7RTM1 612 aa16.9■□□□□ 0.3
HIF3A-214ENST00000531043 PTPN18Q99952 460 aa16.9■□□□□ 0.3
HIF3A-214ENST00000531043 PUS3Q9BZE2 481 aaKnown RBP16.9■□□□□ 0.3
HIF3A-214ENST00000531043 PPP2R3BQ9Y5P8 575 aa16.9■□□□□ 0.3
HIF3A-214ENST00000531043 POTEFA5A3E0 1075 aa16.89■□□□□ 0.29
HIF3A-214ENST00000531043 GRM8O00222 908 aa16.89■□□□□ 0.29
HIF3A-214ENST00000531043 ZBTB48P10074 688 aaPredicted RBP16.89■□□□□ 0.29
HIF3A-214ENST00000531043 GYG1P46976 350 aa16.89■□□□□ 0.29
HIF3A-214ENST00000531043 RBM5P52756 815 aaKnown RBP eCLIP16.89■□□□□ 0.29
HIF3A-214ENST00000531043 CRHR2Q13324 411 aa16.89■□□□□ 0.29
HIF3A-214ENST00000531043 LDHAL6AQ6ZMR3 332 aa16.89■□□□□ 0.29
HIF3A-214ENST00000531043 CNKSR2Q8WXI2 1034 aa16.89■□□□□ 0.29
HIF3A-214ENST00000531043 KAZALD1Q96I82 304 aa16.89■□□□□ 0.29
HIF3A-214ENST00000531043 ALDH1A1P00352 501 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 CCDC57Q2TAC2 916 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 SUPT20HL1Q3ZLR7 823 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 TAF7LQ5H9L4 462 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 WDR63Q8IWG1 891 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 TDRD7Q8NHU6 1098 aaKnown RBP16.88■□□□□ 0.29
HIF3A-214ENST00000531043 CD99L2Q8TCZ2 262 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 SUCLG2Q96I99 432 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 TDRD3Q9H7E2 651 aaKnown RBP16.88■□□□□ 0.29
HIF3A-214ENST00000531043 MRS2Q9HD23 443 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 CNNM1Q9NRU3 951 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 ZNF70Q9UC06 446 aaPredicted RBP16.88■□□□□ 0.29
HIF3A-214ENST00000531043 FAM205AQ6ZU69 1335 aa16.88■□□□□ 0.29
HIF3A-214ENST00000531043 MYO1BO43795 1136 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 INHBEP58166 350 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 SPDYE2Q495Y8 402 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 NCBP3Q53F19 620 aaKnown RBP16.87■□□□□ 0.29
HIF3A-214ENST00000531043 MFSD14BQ5SR56 506 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 TEPSINQ96N21 525 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 ELP3Q9H9T3 547 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 PCDH10Q9P2E7 1040 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 TTF2Q9UNY4 1162 aaKnown RBP16.87■□□□□ 0.29
HIF3A-214ENST00000531043 BRCA2P51587 3418 aa16.87■□□□□ 0.29
HIF3A-214ENST00000531043 IREB2P48200 963 aaKnown RBP16.86■□□□□ 0.29
HIF3A-214ENST00000531043 FAM84BQ96KN1 310 aaPredicted RBP16.86■□□□□ 0.29
HIF3A-214ENST00000531043 ARAP2Q8WZ64 1704 aa16.85■□□□□ 0.29
HIF3A-214ENST00000531043 SLC4A10Q6U841 1118 aa16.85■□□□□ 0.29
HIF3A-214ENST00000531043 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.85■□□□□ 0.29
HIF3A-214ENST00000531043 DZIP1LQ8IYY4 767 aaKnown RBP16.85■□□□□ 0.29
HIF3A-214ENST00000531043 OPTNQ96CV9 577 aa16.85■□□□□ 0.29
HIF3A-214ENST00000531043 MS4A4AQ96JQ5 239 aa16.85■□□□□ 0.29
HIF3A-214ENST00000531043 TMEM39BQ9GZU3 492 aa16.85■□□□□ 0.29
HIF3A-214ENST00000531043 C9orf78Q9NZ63 289 aaPredicted RBP16.85■□□□□ 0.29
HIF3A-214ENST00000531043 IQSEC3Q9UPP2 1182 aaPredicted RBP16.85■□□□□ 0.29
HIF3A-214ENST00000531043 TESPA1A2RU30 521 aaPredicted RBP16.84■□□□□ 0.29
HIF3A-214ENST00000531043 TCP10L2B9ZVM9 353 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms