RNA–Protein interactions for RNA: ENST00000529472.1

CHD7-209, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 3

Gene CHD7, Length 788 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-209	ENST00000529472	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.98	□□□□□ -0.17
CHD7-209	ENST00000529472	GPC2	Q8N158	579 aa		13.98	□□□□□ -0.17
CHD7-209	ENST00000529472	MXD3	Q9BW11	206 aa		13.98	□□□□□ -0.17
CHD7-209	ENST00000529472	KDM2B	Q8NHM5	1336 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	GLTPD2	A6NH11	291 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	UQCRFS1P1	P0C7P4	283 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	YY1	P25490	414 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	ARID4A	P29374	1257 aa	Predicted RBP	13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	SCARF1	Q14162	830 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	DACT2	Q5SW24	774 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	STRIP1	Q5VSL9	837 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	TSHZ3	Q63HK5	1081 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	DPY19L2	Q6NUT2	758 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	PI16	Q6UXB8	463 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	CHD1L	Q86WJ1	897 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	PPP4R2	Q9NY27	417 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	DENND2A	Q9ULE3	1009 aa		13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.97	□□□□□ -0.17
CHD7-209	ENST00000529472	SEMA3E	O15041	775 aa		13.96	□□□□□ -0.17
CHD7-209	ENST00000529472	VIL1	P09327	827 aa	Known RBP	13.96	□□□□□ -0.17
CHD7-209	ENST00000529472	MCAM	P43121	646 aa		13.96	□□□□□ -0.17
CHD7-209	ENST00000529472	GMPS	P49915	693 aa	Predicted RBP	13.96	□□□□□ -0.17
CHD7-209	ENST00000529472	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.96	□□□□□ -0.17
CHD7-209	ENST00000529472	GPATCH3	Q96I76	525 aa		13.96	□□□□□ -0.17
CHD7-209	ENST00000529472	FAM205A	Q6ZU69	1335 aa		13.95	□□□□□ -0.18
CHD7-209	ENST00000529472	MFSD14B	Q5SR56	506 aa		13.95	□□□□□ -0.18
CHD7-209	ENST00000529472	CERS5	Q8N5B7	392 aa		13.95	□□□□□ -0.18
CHD7-209	ENST00000529472	SPATA5	Q8NB90	893 aa		13.95	□□□□□ -0.18
CHD7-209	ENST00000529472	SNRK	Q9NRH2	765 aa		13.95	□□□□□ -0.18
CHD7-209	ENST00000529472	HMG20B	Q9P0W2	317 aa		13.95	□□□□□ -0.18
CHD7-209	ENST00000529472	AKAP11	Q9UKA4	1901 aa		13.95	□□□□□ -0.18
CHD7-209	ENST00000529472	MX1	P20591	662 aa		13.94	□□□□□ -0.18
CHD7-209	ENST00000529472	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.94	□□□□□ -0.18
CHD7-209	ENST00000529472	ECHDC1	Q9NTX5	307 aa		13.94	□□□□□ -0.18
CHD7-209	ENST00000529472	NDUFB9	Q9Y6M9	179 aa		13.94	□□□□□ -0.18
CHD7-209	ENST00000529472	WDR90	Q96KV7	1748 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	SHTN1	A0MZ66	631 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472		F8W031	263 aa	Predicted RBP	13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	RPS12	P25398	132 aa	Known RBP	13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	SCNN1D	P51172	638 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	KIAA0825	Q8IV33	1275 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	AGBL3	Q8NEM8	1001 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	WDR66	Q8TBY9	1149 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	TBC1D22A	Q8WUA7	517 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	DNAJC2	Q99543	621 aa	Known RBP	13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	BOLA2	Q9H3K6	86 aa		13.93	□□□□□ -0.18
CHD7-209	ENST00000529472	PDS5A	Q29RF7	1337 aa	Known RBP	13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	MYO3B	Q8WXR4	1341 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	SALL3	Q9BXA9	1300 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	ATP5J	P18859	108 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	LMOD1	P29536	600 aa	Predicted RBP	13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	ZAP70	P43403	619 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	FKBP1A	P62942	108 aa	Known RBP	13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	GRIK5	Q16478	980 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	TBC1D9	Q6ZT07	1266 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	MICALL2	Q8IY33	904 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	GML	Q99445	158 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	ABCF2	Q9UG63	623 aa		13.92	□□□□□ -0.18
CHD7-209	ENST00000529472	TTC41P	Q6P2S7	1318 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	CYP2E1	P05181	493 aa	Predicted RBP	13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	USP17L8	P0C7I0	530 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	ZGPAT	Q8N5A5	531 aa	Known RBP	13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	RRAGC	Q9HB90	399 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	NMRK2	Q9NPI5	230 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	GPRC5D	Q9NZD1	345 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	CNOT7	Q9UIV1	285 aa	Known RBP	13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	HACL1	Q9UJ83	578 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	SCN4A	P35499	1836 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	ADAMTSL1	Q8N6G6	1762 aa		13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.91	□□□□□ -0.18
CHD7-209	ENST00000529472	SALL1	Q9NSC2	1324 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	IQCA1L	A6NCM1	817 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	GOLIM4	O00461	696 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	ERC2	O15083	957 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	ZBTB22	O15209	634 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	LDHB	P07195	334 aa	Known RBP	13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	PDE4A	P27815	886 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	PRDX5	P30044	214 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	EPS15	P42566	896 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	PDE1A	P54750	535 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	SKAP1	Q86WV1	359 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	DZIP1	Q86YF9	867 aa	Known RBP	13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	OGFOD1	Q8N543	542 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	PI4K2B	Q8TCG2	481 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	DPF2	Q92785	391 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	HAUS7	Q99871	368 aa		13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	TTF2	Q9UNY4	1162 aa	Known RBP	13.9	□□□□□ -0.18
CHD7-209	ENST00000529472	POTEC	B2RU33	542 aa		13.89	□□□□□ -0.19
CHD7-209	ENST00000529472		H7C1D1	291 aa		13.89	□□□□□ -0.19
CHD7-209	ENST00000529472	GLRX3	O76003	335 aa	Known RBP	13.89	□□□□□ -0.19
CHD7-209	ENST00000529472	MAP4K4	O95819	1239 aa	Predicted RBP	13.89	□□□□□ -0.19
CHD7-209	ENST00000529472	PLEKHM2	Q8IWE5	1019 aa		13.89	□□□□□ -0.19
CHD7-209	ENST00000529472	EDC3	Q96F86	508 aa	Known RBP	13.89	□□□□□ -0.19
CHD7-209	ENST00000529472	ANTXR1	Q9H6X2	564 aa		13.89	□□□□□ -0.19
CHD7-209	ENST00000529472	PIH1D3	Q9NQM4	214 aa	Known RBP	13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms