RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CYP4F22Q6NT55 531 aa13.37□□□□□ -0.27
CD44-227ENST00000528086 FRAT1Q92837 279 aaPredicted RBP13.37□□□□□ -0.27
CD44-227ENST00000528086 FBXW7Q969H0 707 aa13.37□□□□□ -0.27
CD44-227ENST00000528086 ZIC5Q96T25 663 aa13.37□□□□□ -0.27
CD44-227ENST00000528086 HIBADHP31937 336 aaKnown RBP13.36□□□□□ -0.27
CD44-227ENST00000528086 BCAMP50895 628 aa13.36□□□□□ -0.27
CD44-227ENST00000528086 MTX1Q13505 466 aa13.36□□□□□ -0.27
CD44-227ENST00000528086 METTL24Q5JXM2 366 aa13.36□□□□□ -0.27
CD44-227ENST00000528086 ABT1Q9ULW3 272 aaKnown RBP13.36□□□□□ -0.27
CD44-227ENST00000528086 IQSEC3Q9UPP2 1182 aaPredicted RBP13.36□□□□□ -0.27
CD44-227ENST00000528086 WDR33Q9C0J8 1336 aaKnown RBP13.36□□□□□ -0.27
CD44-227ENST00000528086 PNMA6EA0A0J9YXQ4 647 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 AOC2O75106 756 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 FKBP1AP62942 108 aaKnown RBP13.35□□□□□ -0.27
CD44-227ENST00000528086 ZNF804AQ7Z570 1209 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 CDCA5Q96FF9 252 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 SIL1Q9H173 461 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 ZNF408Q9H9D4 720 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 COPRSQ9NQ92 184 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 MYO3BQ8WXR4 1341 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 PITPNM2Q9BZ72 1349 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 MYH13Q9UKX3 1938 aa13.35□□□□□ -0.27
CD44-227ENST00000528086 CIAO1O76071 339 aa13.34□□□□□ -0.27
CD44-227ENST00000528086 COL13A1Q5TAT6 717 aaPredicted RBP13.34□□□□□ -0.27
CD44-227ENST00000528086 MOB2Q70IA6 237 aa13.34□□□□□ -0.27
CD44-227ENST00000528086 MTMR14Q8NCE2 650 aa13.34□□□□□ -0.27
CD44-227ENST00000528086 DCPSQ96C86 337 aaKnown RBP13.34□□□□□ -0.27
CD44-227ENST00000528086 CAPNS2Q96L46 248 aa13.34□□□□□ -0.27
CD44-227ENST00000528086 PRMT6Q96LA8 375 aaPredicted RBP13.34□□□□□ -0.27
CD44-227ENST00000528086 WBP1LQ9NX94 342 aa13.34□□□□□ -0.27
CD44-227ENST00000528086 SSC5DA1L4H1 1573 aa13.33□□□□□ -0.28
CD44-227ENST00000528086 FAM155AB1AL88 458 aaPredicted RBP13.33□□□□□ -0.28
CD44-227ENST00000528086 F8W031 263 aaPredicted RBP13.33□□□□□ -0.28
CD44-227ENST00000528086 FOXN1O15353 648 aa13.33□□□□□ -0.28
CD44-227ENST00000528086 IPO8O15397 1037 aaKnown RBP13.33□□□□□ -0.28
CD44-227ENST00000528086 ZKSCAN2Q63HK3 967 aa13.33□□□□□ -0.28
CD44-227ENST00000528086 ZBTB7BO15156 539 aaPredicted RBP13.32□□□□□ -0.28
CD44-227ENST00000528086 GNAI3P08754 354 aa13.32□□□□□ -0.28
CD44-227ENST00000528086 ADORA1P30542 326 aa13.32□□□□□ -0.28
CD44-227ENST00000528086 PUM3Q15397 648 aaKnown RBP13.32□□□□□ -0.28
CD44-227ENST00000528086 CFAP100Q494V2 611 aa13.32□□□□□ -0.28
CD44-227ENST00000528086 MFSD14BQ5SR56 506 aa13.32□□□□□ -0.28
CD44-227ENST00000528086 SULF1Q8IWU6 871 aa13.32□□□□□ -0.28
CD44-227ENST00000528086 HHIPL1Q96JK4 782 aa13.32□□□□□ -0.28
CD44-227ENST00000528086 GBA2Q9HCG7 927 aaPredicted RBP13.32□□□□□ -0.28
CD44-227ENST00000528086 PAPPA2Q9BXP8 1791 aa13.32□□□□□ -0.28
CD44-227ENST00000528086 SPDYE2BA6NHP3 402 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 SRGAP3O43295 1099 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 SPDYE6P0CI01 402 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 CDAN1Q8IWY9 1227 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 OGFOD1Q8N543 542 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 PANK1Q8TE04 598 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 C1orf115Q9H7X2 142 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 FBXO3Q9UK99 471 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 FZD1Q9UP38 647 aa13.31□□□□□ -0.28
CD44-227ENST00000528086 PHKA1P46020 1223 aa13.3□□□□□ -0.28
CD44-227ENST00000528086 HUNKP57058 714 aa13.3□□□□□ -0.28
CD44-227ENST00000528086 POLA2Q14181 598 aa13.3□□□□□ -0.28
CD44-227ENST00000528086 LPIN2Q92539 896 aa13.3□□□□□ -0.28
CD44-227ENST00000528086 CLRN2A0PK11 232 aa13.29□□□□□ -0.28
CD44-227ENST00000528086 GNAI2P04899 355 aa13.29□□□□□ -0.28
CD44-227ENST00000528086 IL15P40933 162 aaPredicted RBP13.29□□□□□ -0.28
CD44-227ENST00000528086 MMP14P50281 582 aa13.29□□□□□ -0.28
CD44-227ENST00000528086 TIMM10P62072 90 aa13.29□□□□□ -0.28
CD44-227ENST00000528086 TFCP2Q12800 502 aa13.29□□□□□ -0.28
CD44-227ENST00000528086 CHAF1AQ13111 956 aaPredicted RBP13.29□□□□□ -0.28
CD44-227ENST00000528086 DLGAP5Q15398 846 aa13.29□□□□□ -0.28
CD44-227ENST00000528086 ATP2B3Q16720 1220 aa13.29□□□□□ -0.28
CD44-227ENST00000528086 DZIP1LQ8IYY4 767 aaKnown RBP13.29□□□□□ -0.28
CD44-227ENST00000528086 TTF2Q9UNY4 1162 aaKnown RBP13.29□□□□□ -0.28
CD44-227ENST00000528086 UBE2Q2LH0YL09 131 aa13.28□□□□□ -0.28
CD44-227ENST00000528086 GRM1Q13255 1194 aa13.28□□□□□ -0.28
CD44-227ENST00000528086 SSH3Q8TE77 659 aa13.28□□□□□ -0.28
CD44-227ENST00000528086 CEP126Q9P2H0 1117 aa13.28□□□□□ -0.28
CD44-227ENST00000528086 HDAC9Q9UKV0 1011 aa13.28□□□□□ -0.28
CD44-227ENST00000528086 AKAP11Q9UKA4 1901 aa13.28□□□□□ -0.28
CD44-227ENST00000528086 ZBTB22O15209 634 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 IFIT1P09914 478 aaKnown RBP13.27□□□□□ -0.29
CD44-227ENST00000528086 HSPA8P11142 646 aaKnown RBP13.27□□□□□ -0.29
CD44-227ENST00000528086 SLC5A1P13866 664 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 CRKP46108 304 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 SPDYE2Q495Y8 402 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 APOBEC3HQ6NTF7 200 aaKnown RBP13.27□□□□□ -0.29
CD44-227ENST00000528086 RGMBQ6NW40 437 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 C2orf69Q8N8R5 385 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 TEPSINQ96N21 525 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 DEFB129Q9H1M3 183 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 TDRD3Q9H7E2 651 aaKnown RBP13.27□□□□□ -0.29
CD44-227ENST00000528086 ZNF70Q9UC06 446 aaPredicted RBP13.27□□□□□ -0.29
CD44-227ENST00000528086 SERPINA10Q9UK55 444 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 MYO5AQ9Y4I1 1855 aaKnown RBP13.27□□□□□ -0.29
CD44-227ENST00000528086 OTOFQ9HC10 1997 aa13.27□□□□□ -0.29
CD44-227ENST00000528086 MAP2K2P36507 400 aa13.26□□□□□ -0.29
CD44-227ENST00000528086 ECE1P42892 770 aa13.26□□□□□ -0.29
CD44-227ENST00000528086 ATP8B2P98198 1209 aa13.26□□□□□ -0.29
CD44-227ENST00000528086 CAVIN4Q5BKX8 364 aa13.26□□□□□ -0.29
CD44-227ENST00000528086 C20orf194Q5TEA3 1177 aa13.26□□□□□ -0.29
CD44-227ENST00000528086 CCDC102BQ68D86 513 aa13.26□□□□□ -0.29
CD44-227ENST00000528086 PAXIP1Q6ZW49 1069 aaPredicted RBP13.26□□□□□ -0.29
CD44-227ENST00000528086 RASAL3Q86YV0 1011 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms