RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 MYRIPQ8NFW9 859 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 SREK1Q8WXA9 508 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 DNAJC25Q9H1X3 360 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 DACT1Q9NYF0 836 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 PSMC4P43686 418 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 FLIIQ13045 1269 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 PPP4R3AQ6IN85 833 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 CABS1Q96KC9 395 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 TCEANC2Q96MN5 208 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 NSD3Q9BZ95 1437 aa9.87□□□□□ -0.83
LIMCH1-218ENST00000513024 VAV2P52735 878 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 CCDC92Q53HC0 331 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 IFIT1P09914 478 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 NOP2P46087 812 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 BIRC2Q13490 618 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 N4BP3O15049 544 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 DNAJC8O75937 253 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 ZNF76P36508 570 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 FLAD1Q8NFF5 587 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 NUF2Q9BZD4 464 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 CCDC196A0A1B0GTZ2 297 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 PRC1O43663 620 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 TTC22Q5TAA0 569 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 CCDC102BQ68D86 513 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 DPY19L2Q6NUT2 758 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 SEC62Q99442 399 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 JRKLQ9Y4A0 524 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 USP16Q9Y5T5 823 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 WDR7Q9Y4E6 1490 aa9.86□□□□□ -0.83
LIMCH1-218ENST00000513024 C6orf229H3BNL8 230 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 PTGS1P23219 599 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 HSPA2P54652 639 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 USP6NLQ92738 828 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 NAPBQ9H115 298 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 ORC3Q9UBD5 711 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 CTAGE9A4FU28 777 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 PPP1R42Q7Z4L9 355 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 CCDC144CPQ8IYA2 1237 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 HOOK2Q96ED9 719 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 LDHCP07864 332 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 RXRBP28702 533 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 GSDMBQ8TAX9 411 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 KLHDC4Q8TBB5 520 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 TSG101Q99816 390 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 XAB2Q9HCS7 855 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 SLC12A7Q9Y666 1083 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 PLA2R1Q13018 1463 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 ZNF213O14771 459 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 AKR1B10O60218 316 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 IDEP14735 1019 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 SDSP20132 328 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 DNM1Q05193 864 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 NAA16Q6N069 864 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 EHMT1Q9H9B1 1298 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 CAPN7Q9Y6W3 813 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 NUP160Q12769 1436 aa9.85□□□□□ -0.83
LIMCH1-218ENST00000513024 METTL24Q5JXM2 366 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 CCDC170Q8IYT3 715 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 AOPEPQ8N6M6 819 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 SEPT8Q92599 483 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 TSNARE1Q96NA8 513 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 ZNF521Q96K83 1311 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 GOLGA8AA7E2F4 631 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 HMGB1P1B2RPK0 211 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 PDE6BP35913 854 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 IFI16Q16666 785 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 LARSQ9P2J5 1176 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 HIP1RO75146 1068 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 PPP2R3AQ06190 1150 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 KIF22Q14807 665 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 ECHDC1Q9NTX5 307 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 ZMYM4Q5VZL5 1548 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 IFIT3O14879 490 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 FGFR1OPO95684 399 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 SYT1P21579 422 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 VPS41P49754 854 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 MAP3K7CLP57077 242 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 HAND2P61296 217 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 HSP90AA5PQ58FG0 334 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 ARHGAP24Q8N264 748 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 VTI1AQ96AJ9 217 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 IRAK4Q9NWZ3 460 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 KDM5DQ9BY66 1539 aa9.84□□□□□ -0.83
LIMCH1-218ENST00000513024 BICDL2A1A5D9 508 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 GNAT3A8MTJ3 354 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 RANBP6O60518 1105 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 VIMP08670 466 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 EVCP57679 992 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 ERCC6LQ2NKX8 1250 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 EYA3Q99504 573 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 TACO1Q9BSH4 297 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 GOLGA6CA6NDK9 693 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 GOLGA6DP0CG33 693 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 CTNNA2P26232 953 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 SYKP43405 635 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 TCERG1LQ5VWI1 586 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 MPRIPQ6WCQ1 1025 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 BRF1Q92994 677 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms