RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 RIPOR2Q9Y4F9 1068 aa12.33□□□□□ -0.44
HDAC3-210ENST00000490808 LTBP1Q14766 1721 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 K7ELQ4 463 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 PDE8BO95263 885 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 ZFYP08048 801 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 UQCRFS1P1P0C7P4 283 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 ZKSCAN1P17029 563 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 KCNJ4P48050 445 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 PUM3Q15397 648 aaKnown RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 SMC1BQ8NDV3 1235 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 ZNF512BQ96KM6 892 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 CCDC85AQ96PX6 553 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 DNAJC2Q99543 621 aaKnown RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 PUS3Q9BZE2 481 aaKnown RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 SEC31BQ9NQW1 1179 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 PAG1Q9NWQ8 432 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 TLR7Q9NYK1 1049 aaKnown RBP12.32□□□□□ -0.44
HDAC3-210ENST00000490808 LEMD3Q9Y2U8 911 aa12.32□□□□□ -0.44
HDAC3-210ENST00000490808 NFKBIEO00221 500 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 ATP2B4P23634 1241 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 HSPA4P34932 840 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 SLC4A3P48751 1232 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 KBTBD3Q8NAB2 608 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 JDP2Q8WYK2 163 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 LPIN2Q92539 896 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 IL17RAQ96F46 866 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 XAGE2Q96GT9 111 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.31□□□□□ -0.442e-7■■□□□ 12.8
HDAC3-210ENST00000490808 HELLSQ9NRZ9 838 aa12.31□□□□□ -0.44
HDAC3-210ENST00000490808 PSMA5P28066 241 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 IARSP41252 1262 aaKnown RBP12.3□□□□□ -0.44
HDAC3-210ENST00000490808 KIF2CQ99661 725 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 SNRKQ9NRH2 765 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 CHMP5Q9NZZ3 219 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 RNF181Q9P0P0 153 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 ANKIB1Q9P2G1 1089 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 GGA1Q9UJY5 639 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 MINPP1Q9UNW1 487 aa12.3□□□□□ -0.44
HDAC3-210ENST00000490808 A0A1B0GUL6 1792 aa12.29□□□□□ -0.44
HDAC3-210ENST00000490808 KIAA2012Q0VF49 1180 aa12.29□□□□□ -0.44
HDAC3-210ENST00000490808 NMIQ13287 307 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-210ENST00000490808 MCMDC2Q4G0Z9 681 aa12.29□□□□□ -0.44
HDAC3-210ENST00000490808 LSG1Q9H089 658 aaKnown RBP12.29□□□□□ -0.44
HDAC3-210ENST00000490808 HMG20BQ9P0W2 317 aa12.29□□□□□ -0.44
HDAC3-210ENST00000490808 CIZ1Q9ULV3 898 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-210ENST00000490808 NSFL1CQ9UNZ2 370 aaKnown RBP12.29□□□□□ -0.44
HDAC3-210ENST00000490808 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-210ENST00000490808 PCNTO95613 3336 aa12.29□□□□□ -0.44
HDAC3-210ENST00000490808 TIAM2Q8IVF5 1701 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 GOLIM4O00461 696 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 NEK4P51957 841 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 UBE4AQ14139 1066 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 KRT32Q14532 448 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 DPY19L2Q6NUT2 758 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 C15orf52Q6ZUT6 534 aaKnown RBP12.28□□□□□ -0.44
HDAC3-210ENST00000490808 ZC3H12CQ9C0D7 883 aaKnown RBP12.28□□□□□ -0.44
HDAC3-210ENST00000490808 CWC22Q9HCG8 908 aaKnown RBP12.28□□□□□ -0.44
HDAC3-210ENST00000490808 GNL3LQ9NVN8 582 aaKnown RBP12.28□□□□□ -0.44
HDAC3-210ENST00000490808 ZNF219Q9P2Y4 722 aaPredicted RBP12.28□□□□□ -0.44
HDAC3-210ENST00000490808 CCDC171Q6TFL3 1326 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 MED23Q9ULK4 1368 aa12.28□□□□□ -0.44
HDAC3-210ENST00000490808 SLC34A2O95436 690 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 MMP14P50281 582 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 CHRNDQ07001 517 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 WASHC4Q2M389 1173 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 LARGE2Q8N3Y3 721 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 TBC1D16Q8TBP0 767 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 MAP4K1Q92918 833 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 TM6SF1Q9BZW5 370 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 U3KPZ7 1027 aaPredicted RBP12.27□□□□□ -0.45
HDAC3-210ENST00000490808 PSME4Q14997 1843 aa12.27□□□□□ -0.45
HDAC3-210ENST00000490808 DUOX1Q9NRD9 1551 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 C6orf229H3BNL8 230 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 ZBTB22O15209 634 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 RNF113AO15541 343 aaKnown RBP12.26□□□□□ -0.45
HDAC3-210ENST00000490808 PPIP5K2O43314 1243 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 UFL1O94874 794 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 GPSM2P81274 684 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 RASSF7Q02833 373 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 CAVIN4Q5BKX8 364 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 NIM1KQ8IY84 436 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 VGLL2Q8N8G2 317 aa12.26□□□□□ -0.45
HDAC3-210ENST00000490808 SLKQ9H2G2 1235 aaPredicted RBP12.26□□□□□ -0.45
HDAC3-210ENST00000490808 ARAP2Q8WZ64 1704 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 SCN4AP35499 1836 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 FZD9O00144 591 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 ARID4AP29374 1257 aaPredicted RBP12.25□□□□□ -0.45
HDAC3-210ENST00000490808 EIF6P56537 245 aaKnown RBP12.25□□□□□ -0.45
HDAC3-210ENST00000490808 PODNQ7Z5L7 613 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 FAM227BQ96M60 508 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 ZNF277Q9NRM2 450 aaPredicted RBP12.25□□□□□ -0.45
HDAC3-210ENST00000490808 CTNNA3Q9UI47 895 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 ZNRF3Q9ULT6 936 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 ZNF804BA4D1E1 1349 aa12.25□□□□□ -0.45
HDAC3-210ENST00000490808 G3V3G9 751 aa12.24□□□□□ -0.45
HDAC3-210ENST00000490808 IGSF3O75054 1194 aa12.24□□□□□ -0.45
HDAC3-210ENST00000490808 HMGB1P09429 215 aaKnown RBP12.24□□□□□ -0.45
HDAC3-210ENST00000490808 PTMSP20962 102 aa12.24□□□□□ -0.45
HDAC3-210ENST00000490808 FGFR2P21802 821 aa12.24□□□□□ -0.45
HDAC3-210ENST00000490808 TNIP1Q15025 636 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms