RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TICAM2Q86XR7 235 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 LRRC59Q96AG4 307 aaKnown RBP18.66■□□□□ 0.58
COL7A1-210ENST00000487017 MAGEB6P1A0A0J9YX57 407 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 CCDC155Q8N6L0 562 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 RSPH14Q9UHP6 348 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 ELP1O95163 1332 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 SBNO2Q9Y2G9 1366 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 TEX14Q8IWB6 1497 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 NAPAP54920 295 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 STX17P56962 302 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 MYL5Q02045 173 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 LZTFL1Q9NQ48 299 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 OGFRQ9NZT2 677 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 SNX14Q9Y5W7 946 aa18.66■□□□□ 0.58
COL7A1-210ENST00000487017 NF2P35240 595 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 UBXN1Q04323 297 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 FEZ1Q99689 392 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 BICDL2A1A5D9 508 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 MMRN2Q9H8L6 949 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 ZNF569Q5MCW4 686 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 A0A1B0GVL5 298 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 CADPS2Q86UW7 1296 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 NFATC2IPQ8NCF5 419 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 PLVAPQ9BX97 442 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 TRIM35Q9UPQ4 493 aa18.65■□□□□ 0.58
COL7A1-210ENST00000487017 SLC27A2O14975 620 aa18.64■□□□□ 0.58
COL7A1-210ENST00000487017 CCDC42Q96M95 316 aa18.64■□□□□ 0.58
COL7A1-210ENST00000487017 ASXL2Q76L83 1435 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 PSMD1Q99460 953 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 NBPF6Q5VWK0 638 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 NBPF5PQ86XG9 351 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-210ENST00000487017 NBPF4Q96M43 638 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 UTP14AQ9BVJ6 771 aaKnown RBP18.64■□□□□ 0.57
COL7A1-210ENST00000487017 SAMM50Q9Y512 469 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 C6orf50Q9HD87 102 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 GUCA1BQ9UMX6 200 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 CAPN2P17655 700 aa18.64■□□□□ 0.57
COL7A1-210ENST00000487017 CCDC174Q6PII3 467 aa18.63■□□□□ 0.57
COL7A1-210ENST00000487017 CLSTN2Q9H4D0 955 aa18.63■□□□□ 0.57
COL7A1-210ENST00000487017 PUF60Q9UHX1 559 aaKnown RBP18.63■□□□□ 0.57
COL7A1-210ENST00000487017 MAGEB6Q8N7X4 407 aa18.63■□□□□ 0.57
COL7A1-210ENST00000487017 FERMT2Q96AC1 680 aa18.63■□□□□ 0.57
COL7A1-210ENST00000487017 RASAL2Q9UJF2 1139 aa18.63■□□□□ 0.57
COL7A1-210ENST00000487017 IL13P35225 146 aa18.63■□□□□ 0.57
COL7A1-210ENST00000487017 DMRT2Q9Y5R5 561 aa18.63■□□□□ 0.57
COL7A1-210ENST00000487017 YTHDC2Q9H6S0 1430 aaKnown RBP18.63■□□□□ 0.57
COL7A1-210ENST00000487017 RNMTO43148 476 aaKnown RBP18.62■□□□□ 0.57
COL7A1-210ENST00000487017 CNGA4Q8IV77 575 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 DDX12PQ92771 950 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 BAG1Q99933 345 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-210ENST00000487017 STAMBPO95630 424 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 HOXC9P31274 260 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 MNAT1P51948 309 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 ERO1AQ96HE7 468 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 LLPHQ9BRT6 129 aaKnown RBP18.62■□□□□ 0.57
COL7A1-210ENST00000487017 TUBBP07437 444 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 HSPA4P34932 840 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 PRPHP41219 470 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 CAPZA3Q96KX2 299 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 BABAM1Q9NWV8 329 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 RXRAP19793 462 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 TTLL12Q14166 644 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-210ENST00000487017 SGSM2O43147 1006 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 LMBR1Q8WVP7 490 aa18.62■□□□□ 0.57
COL7A1-210ENST00000487017 WDR7Q9Y4E6 1490 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 IQUBQ8NA54 791 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 VPS18Q9P253 973 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 DDX21Q9NR30 783 aaKnown RBP eCLIP18.61■□□□□ 0.57
COL7A1-210ENST00000487017 COMMD10Q9Y6G5 202 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 TRPM2O94759 1503 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 MAST1Q9Y2H9 1570 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 MCM7P33993 719 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 NSRP1Q9H0G5 558 aaKnown RBP18.61■□□□□ 0.57
COL7A1-210ENST00000487017 MAP3K19Q56UN5 1328 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 GPATCH11Q8N954 259 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 LUC7L2Q9Y383 392 aaKnown RBP18.61■□□□□ 0.57
COL7A1-210ENST00000487017 AKR1B15C9JRZ8 316 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-210ENST00000487017 KRT13P13646 458 aa18.61■□□□□ 0.57
COL7A1-210ENST00000487017 CEP63Q96MT8 703 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 RHOXF2BP0C7M4 288 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 KRT79Q5XKE5 535 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 RHOXF2Q9BQY4 288 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 LMBRD1Q9NUN5 540 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 ABCC10Q5T3U5 1492 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 ATP2C2O75185 946 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 NEK11Q8NG66 645 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 ATRIPQ8WXE1 791 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 RFC4P35249 363 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 TRAF1Q13077 416 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 MIGA1Q8NAN2 632 aa18.6■□□□□ 0.57
COL7A1-210ENST00000487017 NBPF11Q86T75 865 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 RBM28Q9NW13 759 aaKnown RBP18.59■□□□□ 0.57
COL7A1-210ENST00000487017 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 CHL1O00533 1208 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 DCAF5Q96JK2 942 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 ATP6V1AP38606 617 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 CCDC129Q6ZRS4 1044 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 USP37Q86T82 979 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 RRP36Q96EU6 259 aaKnown RBP18.59■□□□□ 0.57
COL7A1-210ENST00000487017 IRS4O14654 1257 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms