RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 DACT2Q5SW24 774 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 C20orf194Q5TEA3 1177 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 CYP4F22Q6NT55 531 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 KRT26Q7Z3Y9 468 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 CD209Q9NNX6 404 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 GGA3Q9NZ52 723 aa18.82■□□□□ 0.6
LIMS1-212ENST00000474038 USP17L8P0C7I0 530 aa18.81■□□□□ 0.6
LIMS1-212ENST00000474038 ZNF804AQ7Z570 1209 aa18.81■□□□□ 0.6
LIMS1-212ENST00000474038 DCPSQ96C86 337 aaKnown RBP18.81■□□□□ 0.6
LIMS1-212ENST00000474038 CAPNS2Q96L46 248 aa18.81■□□□□ 0.6
LIMS1-212ENST00000474038 FOXN1O15353 648 aa18.8■□□□□ 0.6
LIMS1-212ENST00000474038 IL15P40933 162 aaPredicted RBP18.8■□□□□ 0.6
LIMS1-212ENST00000474038 ATP8B2P98198 1209 aa18.8■□□□□ 0.6
LIMS1-212ENST00000474038 SAPCD2Q86UD0 394 aa18.8■□□□□ 0.6
LIMS1-212ENST00000474038 MYOZ2Q9NPC6 264 aa18.8■□□□□ 0.6
LIMS1-212ENST00000474038 DDX19BQ9UMR2 479 aa18.8■□□□□ 0.6
LIMS1-212ENST00000474038 ARAP2Q8WZ64 1704 aa18.8■□□□□ 0.6
LIMS1-212ENST00000474038 IL1R1P14778 569 aa18.79■□□□□ 0.6
LIMS1-212ENST00000474038 FGFR2P21802 821 aa18.79■□□□□ 0.6
LIMS1-212ENST00000474038 GYG1P46976 350 aa18.79■□□□□ 0.6
LIMS1-212ENST00000474038 SCARF1Q14162 830 aa18.79■□□□□ 0.6
LIMS1-212ENST00000474038 POLA2Q14181 598 aa18.79■□□□□ 0.6
LIMS1-212ENST00000474038 PUM3Q15397 648 aaKnown RBP18.79■□□□□ 0.6
LIMS1-212ENST00000474038 STRIP1Q5VSL9 837 aa18.79■□□□□ 0.6
LIMS1-212ENST00000474038 FAM84BQ96KN1 310 aaPredicted RBP18.79■□□□□ 0.6
LIMS1-212ENST00000474038 HIBADHP31937 336 aaKnown RBP18.78■□□□□ 0.6
LIMS1-212ENST00000474038 ECE1P42892 770 aa18.78■□□□□ 0.6
LIMS1-212ENST00000474038 GTF2IP78347 998 aa18.78■□□□□ 0.6
LIMS1-212ENST00000474038 ANGEL2Q5VTE6 544 aaKnown RBP18.78■□□□□ 0.6
LIMS1-212ENST00000474038 TTLL5Q6EMB2 1281 aa18.78■□□□□ 0.6
LIMS1-212ENST00000474038 SSH3Q8TE77 659 aa18.78■□□□□ 0.6
LIMS1-212ENST00000474038 CEP126Q9P2H0 1117 aa18.78■□□□□ 0.6
LIMS1-212ENST00000474038 THSD7BQ9C0I4 1608 aa18.78■□□□□ 0.6
LIMS1-212ENST00000474038 CEP85Q6P2H3 762 aa18.77■□□□□ 0.6
LIMS1-212ENST00000474038 FBXO33Q7Z6M2 555 aa18.77■□□□□ 0.6
LIMS1-212ENST00000474038 SULF1Q8IWU6 871 aa18.77■□□□□ 0.6
LIMS1-212ENST00000474038 AIDAQ96BJ3 306 aa18.77■□□□□ 0.6
LIMS1-212ENST00000474038 ZBTB40Q9NUA8 1239 aa18.77■□□□□ 0.6
LIMS1-212ENST00000474038 WBP1LQ9NX94 342 aa18.77■□□□□ 0.6
LIMS1-212ENST00000474038 MYO3BQ8WXR4 1341 aa18.76■□□□□ 0.59
LIMS1-212ENST00000474038 AOC2O75106 756 aa18.76■□□□□ 0.59
LIMS1-212ENST00000474038 IFIT1P09914 478 aaKnown RBP18.76■□□□□ 0.59
LIMS1-212ENST00000474038 TDRD7Q8NHU6 1098 aaKnown RBP18.76■□□□□ 0.59
LIMS1-212ENST00000474038 LPIN2Q92539 896 aa18.76■□□□□ 0.59
LIMS1-212ENST00000474038 SCAF8Q9UPN6 1271 aaKnown RBP18.76■□□□□ 0.59
LIMS1-212ENST00000474038 SLC5A1P13866 664 aa18.75■□□□□ 0.59
LIMS1-212ENST00000474038 ATP2B3Q16720 1220 aa18.75■□□□□ 0.59
LIMS1-212ENST00000474038 NBPF9Q3BBW0 867 aa18.75■□□□□ 0.59
LIMS1-212ENST00000474038 CAVIN4Q5BKX8 364 aa18.75■□□□□ 0.59
LIMS1-212ENST00000474038 KIAA0825Q8IV33 1275 aa18.75■□□□□ 0.59
LIMS1-212ENST00000474038 SASH1O94885 1247 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 BCAMP50895 628 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 RRP1P56182 461 aaKnown RBP18.74■□□□□ 0.59
LIMS1-212ENST00000474038 HUNKP57058 714 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 TFCP2Q12800 502 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 G3BP1Q13283 466 aaKnown RBP eCLIP18.74■□□□□ 0.59
LIMS1-212ENST00000474038 VPS37DQ86XT2 251 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 OGFOD1Q8N543 542 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 CDCA5Q96FF9 252 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 HHIPL1Q96JK4 782 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 CHMP4BQ9H444 224 aaKnown RBP18.74■□□□□ 0.59
LIMS1-212ENST00000474038 GBA2Q9HCG7 927 aaPredicted RBP18.74■□□□□ 0.59
LIMS1-212ENST00000474038 FAM205AQ6ZU69 1335 aa18.74■□□□□ 0.59
LIMS1-212ENST00000474038 CTCFP49711 727 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-212ENST00000474038 MAP2K1Q02750 393 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-212ENST00000474038 CERS5Q8N5B7 392 aa18.73■□□□□ 0.59
LIMS1-212ENST00000474038 IQSEC3Q9UPP2 1182 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-212ENST00000474038 JAG2Q9Y219 1238 aa18.73■□□□□ 0.59
LIMS1-212ENST00000474038 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-212ENST00000474038 WNT10BO00744 389 aa18.72■□□□□ 0.59
LIMS1-212ENST00000474038 SURF6O75683 361 aaKnown RBP18.72■□□□□ 0.59
LIMS1-212ENST00000474038 TNS4Q8IZW8 715 aa18.72■□□□□ 0.59
LIMS1-212ENST00000474038 C2orf69Q8N8R5 385 aa18.72■□□□□ 0.59
LIMS1-212ENST00000474038 NOP58Q9Y2X3 529 aaKnown RBP18.72■□□□□ 0.59
LIMS1-212ENST00000474038 ECM29Q5VYK3 1845 aa18.72■□□□□ 0.59
LIMS1-212ENST00000474038 PITPNM2Q9BZ72 1349 aa18.72■□□□□ 0.59
LIMS1-212ENST00000474038 TIMM10P62072 90 aa18.71■□□□□ 0.59
LIMS1-212ENST00000474038 FKBP1AP62942 108 aaKnown RBP18.71■□□□□ 0.59
LIMS1-212ENST00000474038 HDAC9Q9UKV0 1011 aa18.71■□□□□ 0.59
LIMS1-212ENST00000474038 A0A1B0GUL7 405 aa18.7■□□□□ 0.58
LIMS1-212ENST00000474038 F8W031 263 aaPredicted RBP18.7■□□□□ 0.58
LIMS1-212ENST00000474038 HSPA8P11142 646 aaKnown RBP18.7■□□□□ 0.58
LIMS1-212ENST00000474038 ADORA1P30542 326 aa18.7■□□□□ 0.58
LIMS1-212ENST00000474038 MAP2K2P36507 400 aa18.7■□□□□ 0.58
LIMS1-212ENST00000474038 LBX1P52954 281 aa18.7■□□□□ 0.58
LIMS1-212ENST00000474038 PRAMEF18Q5VWM3 479 aa18.7■□□□□ 0.58
LIMS1-212ENST00000474038 SIRT2Q8IXJ6 389 aa18.7■□□□□ 0.58
LIMS1-212ENST00000474038 RPAP2Q8IXW5 612 aaPredicted RBP18.7■□□□□ 0.58
LIMS1-212ENST00000474038 AKAP2Q9Y2D5 859 aa18.7■□□□□ 0.58
LIMS1-212ENST00000474038 OS9Q13438 667 aaPredicted RBP18.69■□□□□ 0.58
LIMS1-212ENST00000474038 ZIC5Q96T25 663 aa18.69■□□□□ 0.58
LIMS1-212ENST00000474038 PCDHAC2Q9Y5I4 1007 aa18.69■□□□□ 0.58
LIMS1-212ENST00000474038 FRAT2O75474 233 aaPredicted RBP18.68■□□□□ 0.58
LIMS1-212ENST00000474038 PHKA1P46020 1223 aa18.68■□□□□ 0.58
LIMS1-212ENST00000474038 MMP14P50281 582 aa18.68■□□□□ 0.58
LIMS1-212ENST00000474038 CHAF1AQ13111 956 aaPredicted RBP18.68■□□□□ 0.58
LIMS1-212ENST00000474038 MFSD14BQ5SR56 506 aa18.68■□□□□ 0.58
LIMS1-212ENST00000474038 RGMBQ6NW40 437 aa18.68■□□□□ 0.58
LIMS1-212ENST00000474038 ZBED3Q96IU2 234 aaPredicted RBP18.68■□□□□ 0.58
LIMS1-212ENST00000474038 PRDM10Q9NQV6 1147 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms