RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 CERS5Q8N5B7 392 aa22.09■■□□□ 1.13
COL7A1-208ENST00000470076 MTMR14Q8NCE2 650 aa22.09■■□□□ 1.13
COL7A1-208ENST00000470076 COL1A1P02452 1464 aaPredicted RBP22.09■■□□□ 1.13
COL7A1-208ENST00000470076 UTYO14607 1347 aa22.08■■□□□ 1.13
COL7A1-208ENST00000470076 PLIN1O60240 522 aa22.08■■□□□ 1.13
COL7A1-208ENST00000470076 SUCLG2Q96I99 432 aa22.08■■□□□ 1.13
COL7A1-208ENST00000470076 ECM29Q5VYK3 1845 aa22.08■■□□□ 1.12
COL7A1-208ENST00000470076 MRPL50Q8N5N7 158 aaKnown RBP22.07■■□□□ 1.12
COL7A1-208ENST00000470076 KAZALD1Q96I82 304 aa22.07■■□□□ 1.12
COL7A1-208ENST00000470076 E9PSI1 815 aa22.06■■□□□ 1.12
COL7A1-208ENST00000470076 NBPF7P0C2Y1 421 aaPredicted RBP22.06■■□□□ 1.12
COL7A1-208ENST00000470076 UBE4AQ14139 1066 aa22.06■■□□□ 1.12
COL7A1-208ENST00000470076 ARMC9Q7Z3E5 817 aa22.06■■□□□ 1.12
COL7A1-208ENST00000470076 PTPRCP08575 1304 aa22.06■■□□□ 1.12
COL7A1-208ENST00000470076 DEFB129Q9H1M3 183 aa22.05■■□□□ 1.12
COL7A1-208ENST00000470076 F8W031 263 aaPredicted RBP22.04■■□□□ 1.12
COL7A1-208ENST00000470076 MYO1BO43795 1136 aa22.04■■□□□ 1.12
COL7A1-208ENST00000470076 PPP2R3BQ9Y5P8 575 aa22.04■■□□□ 1.12
COL7A1-208ENST00000470076 FAM205AQ6ZU69 1335 aa22.04■■□□□ 1.12
COL7A1-208ENST00000470076 SPDYE2BA6NHP3 402 aa22.03■■□□□ 1.12
COL7A1-208ENST00000470076 SPDYE6P0CI01 402 aa22.03■■□□□ 1.12
COL7A1-208ENST00000470076 RABL6Q3YEC7 729 aaPredicted RBP22.03■■□□□ 1.12
COL7A1-208ENST00000470076 CFAP100Q494V2 611 aa22.03■■□□□ 1.12
COL7A1-208ENST00000470076 TDRD7Q8NHU6 1098 aaKnown RBP22.03■■□□□ 1.12
COL7A1-208ENST00000470076 PUS3Q9BZE2 481 aaKnown RBP22.03■■□□□ 1.12
COL7A1-208ENST00000470076 BICC1Q9H694 974 aaKnown RBP22.03■■□□□ 1.12
COL7A1-208ENST00000470076 MROH5Q6ZUA9 1318 aa22.03■■□□□ 1.12
COL7A1-208ENST00000470076 HIBADHP31937 336 aaKnown RBP22.02■■□□□ 1.12
COL7A1-208ENST00000470076 RGS19P49795 217 aa22.02■■□□□ 1.12
COL7A1-208ENST00000470076 PTPN12Q05209 780 aaKnown RBP22.02■■□□□ 1.12
COL7A1-208ENST00000470076 PRKG1Q13976 671 aa22.02■■□□□ 1.12
COL7A1-208ENST00000470076 LDLRAD1Q5T700 205 aa22.02■■□□□ 1.12
COL7A1-208ENST00000470076 JAG2Q9Y219 1238 aa22.02■■□□□ 1.12
COL7A1-208ENST00000470076 RIPOR2Q9Y4F9 1068 aa22.02■■□□□ 1.12
COL7A1-208ENST00000470076 TM4SF4P48230 202 aa22.01■■□□□ 1.11
COL7A1-208ENST00000470076 SSH1Q8WYL5 1049 aa22.01■■□□□ 1.11
COL7A1-208ENST00000470076 FAM84BQ96KN1 310 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-208ENST00000470076 PRMT6Q96LA8 375 aaPredicted RBP22.01■■□□□ 1.11
COL7A1-208ENST00000470076 ANGEL1Q9UNK9 670 aaKnown RBP22.01■■□□□ 1.11
COL7A1-208ENST00000470076 PCDHAC2Q9Y5I4 1007 aa22.01■■□□□ 1.11
COL7A1-208ENST00000470076 GYG1P46976 350 aa22■■□□□ 1.11
COL7A1-208ENST00000470076 SLFN5Q08AF3 891 aa22■■□□□ 1.11
COL7A1-208ENST00000470076 SREBF2Q12772 1141 aa22■■□□□ 1.11
COL7A1-208ENST00000470076 MFSD14BQ5SR56 506 aa22■■□□□ 1.11
COL7A1-208ENST00000470076 CLRN2A0PK11 232 aa21.99■■□□□ 1.11
COL7A1-208ENST00000470076 PPP1R12BO60237 982 aaPredicted RBP21.99■■□□□ 1.11
COL7A1-208ENST00000470076 RBM5P52756 815 aaKnown RBP eCLIP21.99■■□□□ 1.11
COL7A1-208ENST00000470076 MAP3K11Q16584 847 aa21.99■■□□□ 1.11
COL7A1-208ENST00000470076 SUPT20HL1Q3ZLR7 823 aa21.99■■□□□ 1.11
COL7A1-208ENST00000470076 ANKRD44Q8N8A2 993 aa21.99■■□□□ 1.11
COL7A1-208ENST00000470076 ARAP2Q8WZ64 1704 aa21.98■■□□□ 1.11
COL7A1-208ENST00000470076 MLLT1Q03111 559 aaPredicted RBP21.98■■□□□ 1.11
COL7A1-208ENST00000470076 ALDH1L2Q3SY69 923 aa21.98■■□□□ 1.11
COL7A1-208ENST00000470076 CTU1Q7Z7A3 348 aaKnown RBP21.98■■□□□ 1.11
COL7A1-208ENST00000470076 VEZTQ9HBM0 779 aa21.98■■□□□ 1.11
COL7A1-208ENST00000470076 SERPINA10Q9UK55 444 aa21.98■■□□□ 1.11
COL7A1-208ENST00000470076 SSC5DA1L4H1 1573 aa21.97■■□□□ 1.11
COL7A1-208ENST00000470076 UNCXA6NJT0 531 aa21.97■■□□□ 1.11
COL7A1-208ENST00000470076 MKRN3Q13064 507 aaKnown RBP21.97■■□□□ 1.11
COL7A1-208ENST00000470076 METTL24Q5JXM2 366 aa21.97■■□□□ 1.11
COL7A1-208ENST00000470076 SPRYD7Q5W111 196 aa21.97■■□□□ 1.11
COL7A1-208ENST00000470076 VPS37DQ86XT2 251 aa21.97■■□□□ 1.11
COL7A1-208ENST00000470076 USP44Q9H0E7 712 aa21.97■■□□□ 1.11
COL7A1-208ENST00000470076 TTF2Q9UNY4 1162 aaKnown RBP21.97■■□□□ 1.11
COL7A1-208ENST00000470076 TBC1D8O95759 1140 aa21.96■■□□□ 1.11
COL7A1-208ENST00000470076 LRRC24Q50LG9 513 aa21.96■■□□□ 1.11
COL7A1-208ENST00000470076 NOM1Q5C9Z4 860 aaKnown RBP21.96■■□□□ 1.11
COL7A1-208ENST00000470076 FBXO33Q7Z6M2 555 aa21.96■■□□□ 1.11
COL7A1-208ENST00000470076 SLC10A4Q96EP9 437 aa21.96■■□□□ 1.11
COL7A1-208ENST00000470076 FZD1Q9UP38 647 aa21.96■■□□□ 1.11
COL7A1-208ENST00000470076 PDE8BO95263 885 aa21.95■■□□□ 1.1
COL7A1-208ENST00000470076 TNFAIP1Q13829 316 aa21.95■■□□□ 1.1
COL7A1-208ENST00000470076 CAVIN4Q5BKX8 364 aa21.95■■□□□ 1.1
COL7A1-208ENST00000470076 AOX1Q06278 1338 aa21.95■■□□□ 1.1
COL7A1-208ENST00000470076 INHBEP58166 350 aa21.94■■□□□ 1.1
COL7A1-208ENST00000470076 RASA3Q14644 834 aa21.94■■□□□ 1.1
COL7A1-208ENST00000470076 SPDYE2Q495Y8 402 aa21.94■■□□□ 1.1
COL7A1-208ENST00000470076 NBPF12Q5TAG4 269 aaPredicted RBP21.94■■□□□ 1.1
COL7A1-208ENST00000470076 VGLL2Q8N8G2 317 aa21.94■■□□□ 1.1
COL7A1-208ENST00000470076 ZNF296Q8WUU4 475 aaPredicted RBP21.94■■□□□ 1.1
COL7A1-208ENST00000470076 CFHR5Q9BXR6 569 aa21.94■■□□□ 1.1
COL7A1-208ENST00000470076 MANSC4A6NHS7 340 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-208ENST00000470076 ZBTB48P10074 688 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-208ENST00000470076 TBC1D22AQ8WUA7 517 aa21.93■■□□□ 1.1
COL7A1-208ENST00000470076 CDCA7LQ96GN5 454 aa21.93■■□□□ 1.1
COL7A1-208ENST00000470076 SMC4Q9NTJ3 1288 aa21.93■■□□□ 1.1
COL7A1-208ENST00000470076 ZNF70Q9UC06 446 aaPredicted RBP21.93■■□□□ 1.1
COL7A1-208ENST00000470076 GPR25O00155 361 aa21.92■■□□□ 1.1
COL7A1-208ENST00000470076 FRAT2O75474 233 aaPredicted RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 ALDH1A1P00352 501 aa21.92■■□□□ 1.1
COL7A1-208ENST00000470076 CT47B1P0C2W7 299 aaPredicted RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 IREB2P48200 963 aaKnown RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 PKN2Q16513 984 aaKnown RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 DZIP1LQ8IYY4 767 aaKnown RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 TRMT2AQ8IZ69 625 aaKnown RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 KLHDC4Q8TBB5 520 aa21.92■■□□□ 1.1
COL7A1-208ENST00000470076 TDRD3Q9H7E2 651 aaKnown RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 IQSEC3Q9UPP2 1182 aaPredicted RBP21.92■■□□□ 1.1
COL7A1-208ENST00000470076 LAMB1P07942 1786 aa21.92■■□□□ 1.1
COL7A1-208ENST00000470076 KIF16BQ96L93 1317 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms