RNA–Protein interactions for RNA: ENST00000466233.1

CHD3-207, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 4

Gene CHD3, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-207ENST00000466233 UBE2Q2LH0YL09 131 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 TAF5LO75529 589 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 SREBF2Q12772 1141 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 RABL6Q3YEC7 729 aaPredicted RBP17.11■□□□□ 0.33
CHD3-207ENST00000466233 EPHA10Q5JZY3 1008 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 DEFB129Q9H1M3 183 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 CNNM1Q9NRU3 951 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 CHMP3Q9Y3E7 222 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 PTPRCP08575 1304 aa17.11■□□□□ 0.33
CHD3-207ENST00000466233 SPEF2Q9C093 1822 aa17.1■□□□□ 0.33
CHD3-207ENST00000466233 ALDH1A1P00352 501 aa17.1■□□□□ 0.33
CHD3-207ENST00000466233 SUPT20HL1Q3ZLR7 823 aa17.1■□□□□ 0.33
CHD3-207ENST00000466233 CTU1Q7Z7A3 348 aaKnown RBP17.1■□□□□ 0.33
CHD3-207ENST00000466233 FAM9BQ8IZU0 186 aa17.1■□□□□ 0.33
CHD3-207ENST00000466233 CERS5Q8N5B7 392 aa17.1■□□□□ 0.33
CHD3-207ENST00000466233 TDRD7Q8NHU6 1098 aaKnown RBP17.1■□□□□ 0.33
CHD3-207ENST00000466233 MROH5Q6ZUA9 1318 aa17.1■□□□□ 0.33
CHD3-207ENST00000466233 AKAP11Q9UKA4 1901 aa17.09■□□□□ 0.33
CHD3-207ENST00000466233 CASP8AP2Q9UKL3 1982 aa17.09■□□□□ 0.33
CHD3-207ENST00000466233 SPDYE2BA6NHP3 402 aa17.09■□□□□ 0.33
CHD3-207ENST00000466233 E9PSI1 815 aa17.09■□□□□ 0.33
CHD3-207ENST00000466233 SPDYE6P0CI01 402 aa17.09■□□□□ 0.33
CHD3-207ENST00000466233 TTLL12Q14166 644 aaPredicted RBP17.09■□□□□ 0.33
CHD3-207ENST00000466233 HELBQ8NG08 1087 aaPredicted RBP17.09■□□□□ 0.33
CHD3-207ENST00000466233 SERPINA10Q9UK55 444 aa17.09■□□□□ 0.33
CHD3-207ENST00000466233 RIPOR2Q9Y4F9 1068 aa17.09■□□□□ 0.33
CHD3-207ENST00000466233 PPP1R12BO60237 982 aaPredicted RBP17.08■□□□□ 0.32
CHD3-207ENST00000466233 ZBTB48P10074 688 aaPredicted RBP17.08■□□□□ 0.32
CHD3-207ENST00000466233 PRAMEF18Q5VWM3 479 aa17.08■□□□□ 0.32
CHD3-207ENST00000466233 SLC4A10Q6U841 1118 aa17.08■□□□□ 0.32
CHD3-207ENST00000466233 MOB2Q70IA6 237 aa17.08■□□□□ 0.32
CHD3-207ENST00000466233 KAZALD1Q96I82 304 aa17.08■□□□□ 0.32
CHD3-207ENST00000466233 SNAP23O00161 211 aa17.07■□□□□ 0.32
CHD3-207ENST00000466233 HIBADHP31937 336 aaKnown RBP17.07■□□□□ 0.32
CHD3-207ENST00000466233 PTPN12Q05209 780 aaKnown RBP17.07■□□□□ 0.32
CHD3-207ENST00000466233 TNFAIP1Q13829 316 aa17.07■□□□□ 0.32
CHD3-207ENST00000466233 CFAP100Q494V2 611 aa17.07■□□□□ 0.32
CHD3-207ENST00000466233 SPRYD7Q5W111 196 aa17.07■□□□□ 0.32
CHD3-207ENST00000466233 MRIQ9BWK5 157 aa17.07■□□□□ 0.32
CHD3-207ENST00000466233 KIF16BQ96L93 1317 aa17.06■□□□□ 0.32
CHD3-207ENST00000466233 MANSC4A6NHS7 340 aaPredicted RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 NBPF7P0C2Y1 421 aaPredicted RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 HDLBPQ00341 1268 aaKnown RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 MRPL50Q8N5N7 158 aaKnown RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 ZNF594Q96JF6 807 aaPredicted RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 FAM84BQ96KN1 310 aaPredicted RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 PRMT6Q96LA8 375 aaPredicted RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 SCAF8Q9UPN6 1271 aaKnown RBP17.06■□□□□ 0.32
CHD3-207ENST00000466233 ALDH1L2Q3SY69 923 aa17.05■□□□□ 0.32
CHD3-207ENST00000466233 FBXO33Q7Z6M2 555 aa17.05■□□□□ 0.32
CHD3-207ENST00000466233 TBC1D22AQ8WUA7 517 aa17.05■□□□□ 0.32
CHD3-207ENST00000466233 SLC10A4Q96EP9 437 aa17.05■□□□□ 0.32
CHD3-207ENST00000466233 SUCLG2Q96I99 432 aa17.05■□□□□ 0.32
CHD3-207ENST00000466233 ANGEL1Q9UNK9 670 aaKnown RBP17.05■□□□□ 0.32
CHD3-207ENST00000466233 CT47B1P0C2W7 299 aaPredicted RBP17.04■□□□□ 0.32
CHD3-207ENST00000466233 MFSD14BQ5SR56 506 aa17.04■□□□□ 0.32
CHD3-207ENST00000466233 SUGT1Q9Y2Z0 365 aa17.04■□□□□ 0.32
CHD3-207ENST00000466233 A0A1B0GUL6 1792 aa17.03■□□□□ 0.32
CHD3-207ENST00000466233 GPR25O00155 361 aa17.03■□□□□ 0.32
CHD3-207ENST00000466233 PDE8BO95263 885 aa17.03■□□□□ 0.32
CHD3-207ENST00000466233 IREB2P48200 963 aaKnown RBP17.03■□□□□ 0.32
CHD3-207ENST00000466233 SPDYE2Q495Y8 402 aa17.03■□□□□ 0.32
CHD3-207ENST00000466233 CAVIN4Q5BKX8 364 aa17.03■□□□□ 0.32
CHD3-207ENST00000466233 ZNF296Q8WUU4 475 aaPredicted RBP17.03■□□□□ 0.32
CHD3-207ENST00000466233 BICC1Q9H694 974 aaKnown RBP17.03■□□□□ 0.32
CHD3-207ENST00000466233 PLIN1O60240 522 aa17.02■□□□□ 0.32
CHD3-207ENST00000466233 SLFN5Q08AF3 891 aa17.02■□□□□ 0.32
CHD3-207ENST00000466233 ANKRD13AQ8IZ07 590 aa17.02■□□□□ 0.32
CHD3-207ENST00000466233 VGLL2Q8N8G2 317 aa17.02■□□□□ 0.32
CHD3-207ENST00000466233 FBXO3Q9UK99 471 aa17.02■□□□□ 0.32
CHD3-207ENST00000466233 ZBTB22O15209 634 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 TBC1D8O95759 1140 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 RASA3Q14644 834 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 OTUD7BQ6GQQ9 843 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 VPS37DQ86XT2 251 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 ANKRD44Q8N8A2 993 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 PUS3Q9BZE2 481 aaKnown RBP17.01■□□□□ 0.31
CHD3-207ENST00000466233 USP44Q9H0E7 712 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 TTF2Q9UNY4 1162 aaKnown RBP17.01■□□□□ 0.31
CHD3-207ENST00000466233 HDAC5Q9UQL6 1122 aa17.01■□□□□ 0.31
CHD3-207ENST00000466233 ECM29Q5VYK3 1845 aa17■□□□□ 0.31
CHD3-207ENST00000466233 TESPA1A2RU30 521 aaPredicted RBP17■□□□□ 0.31
CHD3-207ENST00000466233 F8W031 263 aaPredicted RBP17■□□□□ 0.31
CHD3-207ENST00000466233 FKTNO75072 461 aa17■□□□□ 0.31
CHD3-207ENST00000466233 GYG1P46976 350 aa17■□□□□ 0.31
CHD3-207ENST00000466233 TNNI2P48788 182 aa17■□□□□ 0.31
CHD3-207ENST00000466233 RBM5P52756 815 aaKnown RBP eCLIP17■□□□□ 0.31
CHD3-207ENST00000466233 FKBP1CQ5VVH2 108 aa17■□□□□ 0.31
CHD3-207ENST00000466233 IFNL1Q8IU54 200 aa17■□□□□ 0.31
CHD3-207ENST00000466233 DZIP1LQ8IYY4 767 aaKnown RBP17■□□□□ 0.31
CHD3-207ENST00000466233 TRMT2AQ8IZ69 625 aaKnown RBP17■□□□□ 0.31
CHD3-207ENST00000466233 SSH1Q8WYL5 1049 aa17■□□□□ 0.31
CHD3-207ENST00000466233 ZNF70Q9UC06 446 aaPredicted RBP17■□□□□ 0.31
CHD3-207ENST00000466233 SSC5DA1L4H1 1573 aa16.99■□□□□ 0.31
CHD3-207ENST00000466233 USP2O75604 605 aaPredicted RBP16.99■□□□□ 0.31
CHD3-207ENST00000466233 METTL24Q5JXM2 366 aa16.99■□□□□ 0.31
CHD3-207ENST00000466233 NBPF12Q5TAG4 269 aaPredicted RBP16.99■□□□□ 0.31
CHD3-207ENST00000466233 FBXO46Q6PJ61 603 aaPredicted RBP16.99■□□□□ 0.31
CHD3-207ENST00000466233 WNK4Q96J92 1243 aa16.99■□□□□ 0.31
CHD3-207ENST00000466233 VEZTQ9HBM0 779 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms