RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 ECM29Q5VYK3 1845 aa21.59■■□□□ 1.05
USP39-208ENST00000455732 ADM5C9JUS6 153 aa21.59■■□□□ 1.05
USP39-208ENST00000455732 SRGAP3O43295 1099 aa21.59■■□□□ 1.05
USP39-208ENST00000455732 PUM3Q15397 648 aaKnown RBP21.59■■□□□ 1.05
USP39-208ENST00000455732 SAPCD2Q86UD0 394 aa21.59■■□□□ 1.05
USP39-208ENST00000455732 OGFOD1Q8N543 542 aa21.59■■□□□ 1.05
USP39-208ENST00000455732 AIDAQ96BJ3 306 aa21.59■■□□□ 1.05
USP39-208ENST00000455732 ARAP2Q8WZ64 1704 aa21.58■■□□□ 1.05
USP39-208ENST00000455732 ZBTB7BO15156 539 aaPredicted RBP21.58■■□□□ 1.05
USP39-208ENST00000455732 FGFR2P21802 821 aa21.58■■□□□ 1.05
USP39-208ENST00000455732 ANGEL2Q5VTE6 544 aaKnown RBP21.58■■□□□ 1.05
USP39-208ENST00000455732 KIAA0825Q8IV33 1275 aa21.58■■□□□ 1.05
USP39-208ENST00000455732 CERS5Q8N5B7 392 aa21.58■■□□□ 1.05
USP39-208ENST00000455732 FAM84BQ96KN1 310 aaPredicted RBP21.58■■□□□ 1.05
USP39-208ENST00000455732 PITPNM2Q9BZ72 1349 aa21.57■■□□□ 1.04
USP39-208ENST00000455732 WDR33Q9C0J8 1336 aaKnown RBP21.57■■□□□ 1.04
USP39-208ENST00000455732 WNT10BO00744 389 aa21.57■■□□□ 1.04
USP39-208ENST00000455732 HIBADHP31937 336 aaKnown RBP21.57■■□□□ 1.04
USP39-208ENST00000455732 IL15P40933 162 aaPredicted RBP21.57■■□□□ 1.04
USP39-208ENST00000455732 GYG1P46976 350 aa21.57■■□□□ 1.04
USP39-208ENST00000455732 NBPF9Q3BBW0 867 aa21.57■■□□□ 1.04
USP39-208ENST00000455732 SULF1Q8IWU6 871 aa21.57■■□□□ 1.04
USP39-208ENST00000455732 TDRD7Q8NHU6 1098 aaKnown RBP21.57■■□□□ 1.04
USP39-208ENST00000455732 SIL1Q9H173 461 aa21.57■■□□□ 1.04
USP39-208ENST00000455732 ZNF408Q9H9D4 720 aa21.57■■□□□ 1.04
USP39-208ENST00000455732 PA2G4Q9UQ80 394 aaKnown RBP21.57■■□□□ 1.04
USP39-208ENST00000455732 SASH1O94885 1247 aa21.56■■□□□ 1.04
USP39-208ENST00000455732 FKBP1AP62942 108 aaKnown RBP21.56■■□□□ 1.04
USP39-208ENST00000455732 FBXO33Q7Z6M2 555 aa21.56■■□□□ 1.04
USP39-208ENST00000455732 PANK1Q8TE04 598 aa21.56■■□□□ 1.04
USP39-208ENST00000455732 ZBED3Q96IU2 234 aaPredicted RBP21.56■■□□□ 1.04
USP39-208ENST00000455732 HHIPL1Q96JK4 782 aa21.56■■□□□ 1.04
USP39-208ENST00000455732 MYH13Q9UKX3 1938 aa21.56■■□□□ 1.04
USP39-208ENST00000455732 FAM205AQ6ZU69 1335 aa21.55■■□□□ 1.04
USP39-208ENST00000455732 FOXN1O15353 648 aa21.55■■□□□ 1.04
USP39-208ENST00000455732 CYP4F22Q6NT55 531 aa21.55■■□□□ 1.04
USP39-208ENST00000455732 LPIN2Q92539 896 aa21.55■■□□□ 1.04
USP39-208ENST00000455732 CAPNS2Q96L46 248 aa21.55■■□□□ 1.04
USP39-208ENST00000455732 HDAC9Q9UKV0 1011 aa21.55■■□□□ 1.04
USP39-208ENST00000455732 IFIT1P09914 478 aaKnown RBP21.54■■□□□ 1.04
USP39-208ENST00000455732 CAVIN4Q5BKX8 364 aa21.54■■□□□ 1.04
USP39-208ENST00000455732 CEP126Q9P2H0 1117 aa21.54■■□□□ 1.04
USP39-208ENST00000455732 PNMA6EA0A0J9YXQ4 647 aa21.53■■□□□ 1.04
USP39-208ENST00000455732 SLC5A1P13866 664 aa21.53■■□□□ 1.04
USP39-208ENST00000455732 ECE1P42892 770 aa21.53■■□□□ 1.04
USP39-208ENST00000455732 CDCA5Q96FF9 252 aa21.53■■□□□ 1.04
USP39-208ENST00000455732 JAG2Q9Y219 1238 aa21.53■■□□□ 1.04
USP39-208ENST00000455732 CTCFP49711 727 aaPredicted RBP21.52■■□□□ 1.04
USP39-208ENST00000455732 POLA2Q14181 598 aa21.52■■□□□ 1.04
USP39-208ENST00000455732 MVPQ14764 893 aaKnown RBP21.52■■□□□ 1.04
USP39-208ENST00000455732 VPS37DQ86XT2 251 aa21.52■■□□□ 1.04
USP39-208ENST00000455732 SSH3Q8TE77 659 aa21.52■■□□□ 1.04
USP39-208ENST00000455732 GBA2Q9HCG7 927 aaPredicted RBP21.52■■□□□ 1.04
USP39-208ENST00000455732 ATP2B3Q16720 1220 aa21.51■■□□□ 1.03
USP39-208ENST00000455732 PAXIP1Q6ZW49 1069 aaPredicted RBP21.51■■□□□ 1.03
USP39-208ENST00000455732 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.51■■□□□ 1.03
USP39-208ENST00000455732 MTMR14Q8NCE2 650 aa21.51■■□□□ 1.03
USP39-208ENST00000455732 WBP1LQ9NX94 342 aa21.51■■□□□ 1.03
USP39-208ENST00000455732 SCAF8Q9UPN6 1271 aaKnown RBP21.51■■□□□ 1.03
USP39-208ENST00000455732 HUNKP57058 714 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 ATP8B2P98198 1209 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 PDE3AQ14432 1141 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 C2orf69Q8N8R5 385 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 C1orf115Q9H7X2 142 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 PRDM10Q9NQV6 1147 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 DDX19BQ9UMR2 479 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 PAPPA2Q9BXP8 1791 aa21.5■■□□□ 1.03
USP39-208ENST00000455732 F8W031 263 aaPredicted RBP21.49■■□□□ 1.03
USP39-208ENST00000455732 ZBTB22O15209 634 aa21.49■■□□□ 1.03
USP39-208ENST00000455732 BCAMP50895 628 aa21.49■■□□□ 1.03
USP39-208ENST00000455732 MFSD14BQ5SR56 506 aa21.49■■□□□ 1.03
USP39-208ENST00000455732 GRM1Q13255 1194 aa21.48■■□□□ 1.03
USP39-208ENST00000455732 DLGAP5Q15398 846 aa21.48■■□□□ 1.03
USP39-208ENST00000455732 YTHDC1Q96MU7 727 aaKnown RBP21.48■■□□□ 1.03
USP39-208ENST00000455732 IQSEC3Q9UPP2 1182 aaPredicted RBP21.48■■□□□ 1.03
USP39-208ENST00000455732 PCDHAC2Q9Y5I4 1007 aa21.48■■□□□ 1.03
USP39-208ENST00000455732 AOC2O75106 756 aa21.47■■□□□ 1.03
USP39-208ENST00000455732 MAP2K2P36507 400 aa21.47■■□□□ 1.03
USP39-208ENST00000455732 MAP2K1Q02750 393 aaPredicted RBP21.47■■□□□ 1.03
USP39-208ENST00000455732 CFAP100Q494V2 611 aa21.47■■□□□ 1.03
USP39-208ENST00000455732 CEP85Q6P2H3 762 aa21.47■■□□□ 1.03
USP39-208ENST00000455732 CHMP4BQ9H444 224 aaKnown RBP21.47■■□□□ 1.03
USP39-208ENST00000455732 AKAP2Q9Y2D5 859 aa21.47■■□□□ 1.03
USP39-208ENST00000455732 COG6Q9Y2V7 657 aa21.47■■□□□ 1.03
USP39-208ENST00000455732 SPDYE2BA6NHP3 402 aa21.46■■□□□ 1.03
USP39-208ENST00000455732 SPDYE6P0CI01 402 aa21.46■■□□□ 1.03
USP39-208ENST00000455732 TFCP2Q12800 502 aa21.46■■□□□ 1.03
USP39-208ENST00000455732 G3BP1Q13283 466 aaKnown RBP eCLIP21.46■■□□□ 1.03
USP39-208ENST00000455732 PRAMEF18Q5VWM3 479 aa21.46■■□□□ 1.03
USP39-208ENST00000455732 APOBEC3FQ8IUX4 373 aaKnown RBP21.46■■□□□ 1.03
USP39-208ENST00000455732 TBC1D22AQ8WUA7 517 aa21.46■■□□□ 1.03
USP39-208ENST00000455732 PRMT6Q96LA8 375 aaPredicted RBP21.46■■□□□ 1.03
USP39-208ENST00000455732 ZBTB40Q9NUA8 1239 aa21.46■■□□□ 1.03
USP39-208ENST00000455732 FRAT2O75474 233 aaPredicted RBP21.45■■□□□ 1.02
USP39-208ENST00000455732 FKBP1BP68106 108 aa21.45■■□□□ 1.02
USP39-208ENST00000455732 RGMBQ6NW40 437 aa21.45■■□□□ 1.02
USP39-208ENST00000455732 TTF2Q9UNY4 1162 aaKnown RBP21.45■■□□□ 1.02
USP39-208ENST00000455732 NOP58Q9Y2X3 529 aaKnown RBP21.45■■□□□ 1.02
USP39-208ENST00000455732 A0A1B0GUL7 405 aa21.44■■□□□ 1.02
USP39-208ENST00000455732 FAM155AB1AL88 458 aaPredicted RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms