RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TNRQ92752 1358 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 HS2ST1Q7LGA3 356 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 SPATA24Q86W54 205 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 CCDC25Q86WR0 208 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 GPCPD1Q9NPB8 672 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 SPAG1Q07617 926 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 NBPF14Q5TI25 921 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 PPIP5K1Q6PFW1 1433 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 SPTLC2O15270 562 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 CHMP2AO43633 222 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 KRT5P13647 590 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 ATP8B2P98198 1209 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 MCM6Q14566 821 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 CCDC114Q96M63 670 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 NSRP1Q9H0G5 558 aaKnown RBP17.41■□□□□ 0.38
PTPRF-206ENST00000429895 ATP2A1O14983 1001 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 CCDC186Q7Z3E2 898 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 GPATCH11Q8N954 259 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 EIF6P56537 245 aaKnown RBP17.4■□□□□ 0.38
PTPRF-206ENST00000429895 KARSQ15046 597 aaKnown RBP17.4■□□□□ 0.38
PTPRF-206ENST00000429895 LMBR1Q8WVP7 490 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 CALCOCO1Q9P1Z2 691 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 CEP83Q9Y592 693 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 CCDC171Q6TFL3 1326 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 ALDH1L1O75891 902 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 PLCG2P16885 1265 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 GNAT2P19087 354 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 KIAA0586Q9BVV6 1533 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 CALML3P27482 149 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 PAXBP1Q9Y5B6 917 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 GNPATO15228 680 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 ZBTB16Q05516 673 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 ATRIPQ8WXE1 791 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 TXNDC16Q9P2K2 825 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 GUCA1BQ9UMX6 200 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 ATP6V0A2Q9Y487 856 aa17.4■□□□□ 0.38
PTPRF-206ENST00000429895 ODF2LQ9ULJ1 636 aa17.39■□□□□ 0.38
PTPRF-206ENST00000429895 IQGAP2Q13576 1575 aa17.39■□□□□ 0.38
PTPRF-206ENST00000429895 RBM17Q96I25 401 aaKnown RBP17.39■□□□□ 0.37
PTPRF-206ENST00000429895 EYA3Q99504 573 aa17.39■□□□□ 0.37
PTPRF-206ENST00000429895 FAM169AQ9Y6X4 670 aa17.39■□□□□ 0.37
PTPRF-206ENST00000429895 DENND4BO75064 1496 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-206ENST00000429895 TBC1D32Q96NH3 1257 aa17.39■□□□□ 0.37
PTPRF-206ENST00000429895 MAK16Q9BXY0 300 aaKnown RBP17.39■□□□□ 0.37
PTPRF-206ENST00000429895 F13A1P00488 732 aa17.39■□□□□ 0.37
PTPRF-206ENST00000429895 PARP1P09874 1014 aaKnown RBP17.39■□□□□ 0.37
PTPRF-206ENST00000429895 RASA3Q14644 834 aa17.39■□□□□ 0.37
PTPRF-206ENST00000429895 CCDC117Q8IWD4 279 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-206ENST00000429895 CCDC42Q96M95 316 aa17.39■□□□□ 0.37
PTPRF-206ENST00000429895 IL16Q14005 1332 aa17.39■□□□□ 0.37
PTPRF-206ENST00000429895 MTHFSDQ2M296 383 aaKnown RBP17.39■□□□□ 0.37
PTPRF-206ENST00000429895 MRPL50Q8N5N7 158 aaKnown RBP17.39■□□□□ 0.37
PTPRF-206ENST00000429895 CTAGE9A4FU28 777 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 KIF5AQ12840 1032 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 DTHD1Q6ZMT9 781 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 PPP1R9BQ96SB3 815 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 CAVIN2O95810 425 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 ZYXQ15942 572 aaKnown RBP17.38■□□□□ 0.37
PTPRF-206ENST00000429895 MAP7D1Q3KQU3 841 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 IFT81Q8WYA0 676 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 WDR7Q9Y4E6 1490 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 PPP1R7Q15435 360 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 MSANTD4Q8NCY6 345 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 NOD1Q9Y239 953 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 PCF11O94913 1555 aaKnown RBP17.38■□□□□ 0.37
PTPRF-206ENST00000429895 BICDL2A1A5D9 508 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 HSPA4P34932 840 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 BIRC3Q13489 604 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 EIF4A2Q14240 407 aaKnown RBP17.38■□□□□ 0.37
PTPRF-206ENST00000429895 KLHL40Q2TBA0 621 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 ANKRD2Q9GZV1 360 aa17.38■□□□□ 0.37
PTPRF-206ENST00000429895 KRT9P35527 623 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 ZMYND15Q9H091 742 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 SNX16P57768 344 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 LZTFL1Q9NQ48 299 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.37■□□□□ 0.371e-6■□□□□ 9.9
PTPRF-206ENST00000429895 V9GYY5 206 aaPredicted RBP17.37■□□□□ 0.37
PTPRF-206ENST00000429895 DHX29Q7Z478 1369 aaKnown RBP17.37■□□□□ 0.37
PTPRF-206ENST00000429895 ZNF174Q15697 407 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 LETM2Q2VYF4 491 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 FCHSD1Q86WN1 690 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 TIGD1Q96MW7 591 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 CCDC160A6NGH7 325 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 GNA11P29992 359 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 KRT83P78385 493 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 RNF34Q969K3 372 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 PRKG1Q13976 671 aa17.37■□□□□ 0.37
PTPRF-206ENST00000429895 TRAPPC3LQ5T215 181 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 KCNK9Q9NPC2 374 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 GINS2Q9Y248 185 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 MBD4O95243 580 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 CCDC129Q6ZRS4 1044 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 ANKRD44Q8N8A2 993 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 SMC6Q96SB8 1091 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 PICK1Q9NRD5 415 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 TLDC2A0PJX2 215 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 PTPDC1A2A3K4 754 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 CCDC169A6NNP5 214 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 UFL1O94874 794 aa17.36■□□□□ 0.37
PTPRF-206ENST00000429895 CFAP58Q5T655 872 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms