RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 HUNKP57058 714 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 COL13A1Q5TAT6 717 aaPredicted RBP11.84□□□□□ -0.51
TRIM39-208ENST00000428555 PRAMEF18Q5VWM3 479 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 ATG9AQ7Z3C6 839 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 VGLL2Q8N8G2 317 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 C2orf69Q8N8R5 385 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 CDCA5Q96FF9 252 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 SIL1Q9H173 461 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 WBP1LQ9NX94 342 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 IQSEC3Q9UPP2 1182 aaPredicted RBP11.84□□□□□ -0.51
TRIM39-208ENST00000428555 HDAC5Q9UQL6 1122 aa11.84□□□□□ -0.51
TRIM39-208ENST00000428555 GNAI3P08754 354 aa11.83□□□□□ -0.52
TRIM39-208ENST00000428555 ECE1P42892 770 aa11.83□□□□□ -0.52
TRIM39-208ENST00000428555 BCAMP50895 628 aa11.83□□□□□ -0.52
TRIM39-208ENST00000428555 FKBP1AP62942 108 aaKnown RBP11.83□□□□□ -0.52
TRIM39-208ENST00000428555 DLGAP5Q15398 846 aa11.83□□□□□ -0.52
TRIM39-208ENST00000428555 VPS37DQ86XT2 251 aa11.83□□□□□ -0.52
TRIM39-208ENST00000428555 ZBED3Q96IU2 234 aaPredicted RBP11.83□□□□□ -0.52
TRIM39-208ENST00000428555 GBA2Q9HCG7 927 aaPredicted RBP11.83□□□□□ -0.52
TRIM39-208ENST00000428555 PA2G4Q9UQ80 394 aaKnown RBP11.83□□□□□ -0.52
TRIM39-208ENST00000428555 PCDHAC2Q9Y5I4 1007 aa11.83□□□□□ -0.52
TRIM39-208ENST00000428555 FAM205AQ6ZU69 1335 aa11.83□□□□□ -0.52
TRIM39-208ENST00000428555 FOXN1O15353 648 aa11.82□□□□□ -0.52
TRIM39-208ENST00000428555 FGFR2P21802 821 aa11.82□□□□□ -0.52
TRIM39-208ENST00000428555 CAVIN4Q5BKX8 364 aa11.82□□□□□ -0.52
TRIM39-208ENST00000428555 ZKSCAN2Q63HK3 967 aa11.82□□□□□ -0.52
TRIM39-208ENST00000428555 HHIPL1Q96JK4 782 aa11.82□□□□□ -0.52
TRIM39-208ENST00000428555 ZBED9Q6R2W3 1325 aa11.82□□□□□ -0.52
TRIM39-208ENST00000428555 PITPNM2Q9BZ72 1349 aa11.82□□□□□ -0.52
TRIM39-208ENST00000428555 FRAT2O75474 233 aaPredicted RBP11.81□□□□□ -0.52
TRIM39-208ENST00000428555 IFIT1P09914 478 aaKnown RBP11.81□□□□□ -0.52
TRIM39-208ENST00000428555 MAP2K2P36507 400 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 MAP2K1Q02750 393 aaPredicted RBP11.81□□□□□ -0.52
TRIM39-208ENST00000428555 CHAF1AQ13111 956 aaPredicted RBP11.81□□□□□ -0.52
TRIM39-208ENST00000428555 PUM3Q15397 648 aaKnown RBP11.81□□□□□ -0.52
TRIM39-208ENST00000428555 CFAP100Q494V2 611 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 MFSD14BQ5SR56 506 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 TMEM57Q8N5G2 664 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 AIDAQ96BJ3 306 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 PRMT6Q96LA8 375 aaPredicted RBP11.81□□□□□ -0.52
TRIM39-208ENST00000428555 ZIC5Q96T25 663 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 CEP126Q9P2H0 1117 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 SPEF2Q9C093 1822 aa11.81□□□□□ -0.52
TRIM39-208ENST00000428555 SRGAP3O43295 1099 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 CIAO1O76071 339 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 RBM5P52756 815 aaKnown RBP eCLIP11.8□□□□□ -0.52
TRIM39-208ENST00000428555 GRIK5Q16478 980 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 RGMBQ6NW40 437 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 MOB2Q70IA6 237 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 MTMR14Q8NCE2 650 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 LPIN2Q92539 896 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 COPRSQ9NQ92 184 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 FBXO3Q9UK99 471 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 TTF2Q9UNY4 1162 aaKnown RBP11.8□□□□□ -0.52
TRIM39-208ENST00000428555 AOX1Q06278 1338 aa11.8□□□□□ -0.52
TRIM39-208ENST00000428555 CLRN2A0PK11 232 aa11.79□□□□□ -0.52
TRIM39-208ENST00000428555 SPDYE2BA6NHP3 402 aa11.79□□□□□ -0.52
TRIM39-208ENST00000428555 UBE2Q2LH0YL09 131 aa11.79□□□□□ -0.52
TRIM39-208ENST00000428555 GNAI2P04899 355 aa11.79□□□□□ -0.52
TRIM39-208ENST00000428555 SPDYE6P0CI01 402 aa11.79□□□□□ -0.52
TRIM39-208ENST00000428555 SLC5A1P13866 664 aa11.79□□□□□ -0.52
TRIM39-208ENST00000428555 IL15P40933 162 aaPredicted RBP11.79□□□□□ -0.52
TRIM39-208ENST00000428555 CTCFP49711 727 aaPredicted RBP11.79□□□□□ -0.52
TRIM39-208ENST00000428555 ZNF157P51786 506 aaPredicted RBP11.79□□□□□ -0.52
TRIM39-208ENST00000428555 FAM155AB1AL88 458 aaPredicted RBP11.78□□□□□ -0.52
TRIM39-208ENST00000428555 RLBP1P12271 317 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 LBX1P52954 281 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 TIMM10P62072 90 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 MTX1Q13505 466 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 TTLL12Q14166 644 aaPredicted RBP11.78□□□□□ -0.52
TRIM39-208ENST00000428555 ATP2B3Q16720 1220 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 IFFO2Q5TF58 517 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 APOBEC3FQ8IUX4 373 aaKnown RBP11.78□□□□□ -0.52
TRIM39-208ENST00000428555 DZIP1LQ8IYY4 767 aaKnown RBP11.78□□□□□ -0.52
TRIM39-208ENST00000428555 CCDC102AQ96A19 550 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 DEFB129Q9H1M3 183 aa11.78□□□□□ -0.52
TRIM39-208ENST00000428555 PNMA6EA0A0J9YXQ4 647 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 MYO1BO43795 1136 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 FKBP1BP68106 108 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 KIF23Q02241 960 aaPredicted RBP11.77□□□□□ -0.53
TRIM39-208ENST00000428555 TFCP2Q12800 502 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 NOGQ13253 232 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 PRKG1Q13976 671 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 TBC1D22AQ8WUA7 517 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 BEGAINQ9BUH8 593 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 TDRD3Q9H7E2 651 aaKnown RBP11.77□□□□□ -0.53
TRIM39-208ENST00000428555 VEZTQ9HBM0 779 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 SERPINA10Q9UK55 444 aa11.77□□□□□ -0.53
TRIM39-208ENST00000428555 POLR2AP24928 1970 aaKnown RBP11.77□□□□□ -0.53
TRIM39-208ENST00000428555 ZBTB7BO15156 539 aaPredicted RBP11.76□□□□□ -0.53
TRIM39-208ENST00000428555 HSPA8P11142 646 aaKnown RBP11.76□□□□□ -0.53
TRIM39-208ENST00000428555 ADORA1P30542 326 aa11.76□□□□□ -0.53
TRIM39-208ENST00000428555 NF2P35240 595 aa11.76□□□□□ -0.53
TRIM39-208ENST00000428555 CRKP46108 304 aa11.76□□□□□ -0.53
TRIM39-208ENST00000428555 FTSJ3Q8IY81 847 aaKnown RBP11.76□□□□□ -0.53
TRIM39-208ENST00000428555 PRDM10Q9NQV6 1147 aa11.76□□□□□ -0.53
TRIM39-208ENST00000428555 ZNF70Q9UC06 446 aaPredicted RBP11.76□□□□□ -0.53
TRIM39-208ENST00000428555 TSKSQ9UJT2 592 aa11.76□□□□□ -0.53
TRIM39-208ENST00000428555 FZD1Q9UP38 647 aa11.76□□□□□ -0.53
TRIM39-208ENST00000428555 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms