RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PRMT6Q96LA8 375 aaPredicted RBP10.34□□□□□ -0.75
VIM-202ENST00000421459 MYH16Q9H6N6 1097 aa10.34□□□□□ -0.75
VIM-202ENST00000421459 HTTP42858 3142 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 PSME4Q14997 1843 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 FKTNO75072 461 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 GJA5P36382 358 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 IFIT5Q13325 482 aaKnown RBP10.33□□□□□ -0.76
VIM-202ENST00000421459 CFAP100Q494V2 611 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 NBPF12Q5TAG4 269 aaPredicted RBP10.33□□□□□ -0.76
VIM-202ENST00000421459 APOBEC3FQ8IUX4 373 aaKnown RBP10.33□□□□□ -0.76
VIM-202ENST00000421459 SLC10A4Q96EP9 437 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 VEZTQ9HBM0 779 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 SSC5DA1L4H1 1573 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 IL16Q14005 1332 aa10.33□□□□□ -0.76
VIM-202ENST00000421459 CENPFP49454 3210 aa10.32□□□□□ -0.76
VIM-202ENST00000421459 MKI67P46013 3256 aaKnown RBP10.32□□□□□ -0.76
VIM-202ENST00000421459 IGF2BP3O00425 579 aaKnown RBP eCLIP10.32□□□□□ -0.76
VIM-202ENST00000421459 IL1R1P14778 569 aa10.32□□□□□ -0.76
VIM-202ENST00000421459 RBM5P52756 815 aaKnown RBP eCLIP10.32□□□□□ -0.76
VIM-202ENST00000421459 SREBF2Q12772 1141 aa10.32□□□□□ -0.76
VIM-202ENST00000421459 CDAN1Q8IWY9 1227 aa10.32□□□□□ -0.76
VIM-202ENST00000421459 PUS3Q9BZE2 481 aaKnown RBP10.32□□□□□ -0.76
VIM-202ENST00000421459 SPDYE2BA6NHP3 402 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 USP2O75604 605 aaPredicted RBP10.31□□□□□ -0.76
VIM-202ENST00000421459 SPDYE6P0CI01 402 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 GYG1P46976 350 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 CAP1Q01518 475 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 GRIK5Q16478 980 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 PKN2Q16513 984 aaKnown RBP10.31□□□□□ -0.76
VIM-202ENST00000421459 LDHAL6AQ6ZMR3 332 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 C15orf52Q6ZUT6 534 aaKnown RBP10.31□□□□□ -0.76
VIM-202ENST00000421459 ZNF804AQ7Z570 1209 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 IFNL1Q8IU54 200 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 MTMR14Q8NCE2 650 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 WNK4Q96J92 1243 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 MRS2Q9HD23 443 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 AKAP11Q9UKA4 1901 aa10.31□□□□□ -0.76
VIM-202ENST00000421459 BRCA2P51587 3418 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 RASA3Q14644 834 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 MAP3K11Q16584 847 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 CCDC57Q2TAC2 916 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 FBXO46Q6PJ61 603 aaPredicted RBP10.3□□□□□ -0.76
VIM-202ENST00000421459 SLC4A10Q6U841 1118 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 CNKSR2Q8WXI2 1034 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 KAZALD1Q96I82 304 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 SUCLG2Q96I99 432 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 PTPN18Q99952 460 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 TDRD3Q9H7E2 651 aaKnown RBP10.3□□□□□ -0.76
VIM-202ENST00000421459 CNNM1Q9NRU3 951 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 TRIM17Q9Y577 477 aa10.3□□□□□ -0.76
VIM-202ENST00000421459 POTEFA5A3E0 1075 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 MANSC4A6NHS7 340 aaPredicted RBP10.29□□□□□ -0.76
VIM-202ENST00000421459 GRM8O00222 908 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 PPP1R12BO60237 982 aaPredicted RBP10.29□□□□□ -0.76
VIM-202ENST00000421459 MMP14P50281 582 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 TAF7LQ5H9L4 462 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 OTOP1Q7RTM1 612 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 WDR63Q8IWG1 891 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 CD99L2Q8TCZ2 262 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 FAM84BQ96KN1 310 aaPredicted RBP10.29□□□□□ -0.76
VIM-202ENST00000421459 CFHR5Q9BXR6 569 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 ELP3Q9H9T3 547 aa10.29□□□□□ -0.76
VIM-202ENST00000421459 ZNF70Q9UC06 446 aaPredicted RBP10.29□□□□□ -0.76
VIM-202ENST00000421459 IQSEC3Q9UPP2 1182 aaPredicted RBP10.29□□□□□ -0.76
VIM-202ENST00000421459 TCP10L2B9ZVM9 353 aa10.28□□□□□ -0.76
VIM-202ENST00000421459 CRHR2Q13324 411 aa10.28□□□□□ -0.76
VIM-202ENST00000421459 SUPT20HL1Q3ZLR7 823 aa10.28□□□□□ -0.76
VIM-202ENST00000421459 NOM1Q5C9Z4 860 aaKnown RBP10.28□□□□□ -0.76
VIM-202ENST00000421459 PRPF38BQ5VTL8 546 aaKnown RBP10.28□□□□□ -0.76
VIM-202ENST00000421459 TDRD7Q8NHU6 1098 aaKnown RBP10.28□□□□□ -0.76
VIM-202ENST00000421459 TMEM39BQ9GZU3 492 aa10.28□□□□□ -0.76
VIM-202ENST00000421459 C9orf78Q9NZ63 289 aaPredicted RBP10.28□□□□□ -0.76
VIM-202ENST00000421459 TTF2Q9UNY4 1162 aaKnown RBP10.28□□□□□ -0.76
VIM-202ENST00000421459 MYH3P11055 1940 aa10.28□□□□□ -0.76
VIM-202ENST00000421459 MYO1BO43795 1136 aa10.27□□□□□ -0.77
VIM-202ENST00000421459 NBPF7P0C2Y1 421 aaPredicted RBP10.27□□□□□ -0.77
VIM-202ENST00000421459 ZBTB48P10074 688 aaPredicted RBP10.27□□□□□ -0.77
VIM-202ENST00000421459 HIBADHP31937 336 aaKnown RBP10.27□□□□□ -0.77
VIM-202ENST00000421459 IREB2P48200 963 aaKnown RBP10.27□□□□□ -0.77
VIM-202ENST00000421459 CACNB3P54284 484 aa10.27□□□□□ -0.77
VIM-202ENST00000421459 FKBP1AP62942 108 aaKnown RBP10.27□□□□□ -0.77
VIM-202ENST00000421459 CHAF1AQ13111 956 aaPredicted RBP10.27□□□□□ -0.77
VIM-202ENST00000421459 LRRC24Q50LG9 513 aa10.27□□□□□ -0.77
VIM-202ENST00000421459 MFSD14BQ5SR56 506 aa10.27□□□□□ -0.77
VIM-202ENST00000421459 TEPSINQ96N21 525 aa10.27□□□□□ -0.77
VIM-202ENST00000421459 PPP2R3BQ9Y5P8 575 aa10.27□□□□□ -0.77
VIM-202ENST00000421459 FAM205AQ6ZU69 1335 aa10.27□□□□□ -0.77
VIM-202ENST00000421459 COL1A1P02452 1464 aaPredicted RBP10.26□□□□□ -0.77
VIM-202ENST00000421459 ALDH1A1P00352 501 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 CRKP46108 304 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 INHBEP58166 350 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 SPDYE2Q495Y8 402 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.26□□□□□ -0.77
VIM-202ENST00000421459 DZIP1LQ8IYY4 767 aaKnown RBP10.26□□□□□ -0.77
VIM-202ENST00000421459 FAM9BQ8IZU0 186 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 KLHDC4Q8TBB5 520 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 OPTNQ96CV9 577 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 MS4A4AQ96JQ5 239 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 SRCIN1Q9C0H9 1055 aa10.26□□□□□ -0.77
VIM-202ENST00000421459 BICC1Q9H694 974 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms