RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 GOLPH3LQ9H4A5 285 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 ZNF532Q9HCE3 1301 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 LETM1O95202 739 aaPredicted RBP15.68■□□□□ 0.1
VPS54-203ENST00000409558 NLRP10Q86W26 655 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 TTLL11Q8NHH1 800 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 AKAP2Q9Y2D5 859 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 CLIC4Q9Y696 253 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 SMIM22K7EJ46 135 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 BCAMP50895 628 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 SYNE3Q6ZMZ3 975 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 C11orf57Q6ZUT1 292 aaPredicted RBP15.67■□□□□ 0.1
VPS54-203ENST00000409558 TMEM87AQ8NBN3 555 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 FAM200AQ8TCP9 573 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 HELLSQ9NRZ9 838 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 TRMT1Q9NXH9 659 aaKnown RBP15.67■□□□□ 0.1
VPS54-203ENST00000409558 KCNB2Q92953 911 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 CFAP45Q9UL16 551 aa15.67■□□□□ 0.1
VPS54-203ENST00000409558 ZBTB38Q8NAP3 1195 aaPredicted RBP15.66■□□□□ 0.1
VPS54-203ENST00000409558 USPL1Q5W0Q7 1092 aa15.66■□□□□ 0.1
VPS54-203ENST00000409558 PRDM1O75626 825 aa15.66■□□□□ 0.1
VPS54-203ENST00000409558 CCDC102BQ68D86 513 aa15.66■□□□□ 0.1
VPS54-203ENST00000409558 LRP2BPQ9P2M1 347 aa15.66■□□□□ 0.1
VPS54-203ENST00000409558 CAMTA1Q9Y6Y1 1673 aa15.66■□□□□ 0.1
VPS54-203ENST00000409558 KDM3BQ7LBC6 1761 aa15.66■□□□□ 0.1
VPS54-203ENST00000409558 PFKFB2O60825 505 aa15.65■□□□□ 0.1
VPS54-203ENST00000409558 MBD4O95243 580 aa15.65■□□□□ 0.1
VPS54-203ENST00000409558 TDO2P48775 406 aa15.65■□□□□ 0.1
VPS54-203ENST00000409558 MCM5P33992 734 aa15.65■□□□□ 0.1
VPS54-203ENST00000409558 CTSWP56202 376 aa15.65■□□□□ 0.1
VPS54-203ENST00000409558 GIGYF2Q6Y7W6 1299 aaKnown RBP15.65■□□□□ 0.1
VPS54-203ENST00000409558 ISCA1Q9BUE6 129 aa15.65■□□□□ 0.1
VPS54-203ENST00000409558 NIP7Q9Y221 180 aaKnown RBP eCLIP15.65■□□□□ 0.1
VPS54-203ENST00000409558 KCNQ2O43526 872 aa15.64■□□□□ 0.1
VPS54-203ENST00000409558 NCOA7Q8NI08 942 aa15.64■□□□□ 0.1
VPS54-203ENST00000409558 TBC1D10CQ8IV04 446 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 CLIP2Q9UDT6 1046 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 SLIT3O75094 1523 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 AOPEPQ8N6M6 819 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 DSCC1Q9BVC3 393 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.64■□□□□ 0.09
VPS54-203ENST00000409558 HMGB1P09429 215 aaKnown RBP15.64■□□□□ 0.09
VPS54-203ENST00000409558 FDPSP14324 419 aaKnown RBP15.64■□□□□ 0.09
VPS54-203ENST00000409558 APPBP2Q92624 585 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 NAPBQ9H115 298 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 KIF3AQ9Y496 699 aa15.64■□□□□ 0.09
VPS54-203ENST00000409558 MAP3K15Q6ZN16 1313 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 PDILTQ8N807 584 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 SLC26A6Q9BXS9 759 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 KCNF1Q9H3M0 494 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 SMC2O95347 1197 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 PCCAP05165 728 aaPredicted RBP15.63■□□□□ 0.09
VPS54-203ENST00000409558 CYB5R4Q7L1T6 521 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 VPS37DQ86XT2 251 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 SDR42E1Q8WUS8 393 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 CLSTN2Q9H4D0 955 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 CTNNA3Q9UI47 895 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 SH3TC1Q8TE82 1336 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 IFIT3O14879 490 aaKnown RBP15.63■□□□□ 0.09
VPS54-203ENST00000409558 SUSD4Q5VX71 490 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 CREBRFQ8IUR6 639 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 RAI14Q9P0K7 980 aa15.63■□□□□ 0.09
VPS54-203ENST00000409558 METAP2P50579 478 aaKnown RBP eCLIP15.62■□□□□ 0.09
VPS54-203ENST00000409558 TMEM67Q5HYA8 995 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 FUCA2Q9BTY2 467 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 DDX19AQ9NUU7 478 aaKnown RBP15.62■□□□□ 0.09
VPS54-203ENST00000409558 PCDHA7Q9UN72 937 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 ZNF500O60304 480 aaPredicted RBP15.62■□□□□ 0.09
VPS54-203ENST00000409558 CLIC6Q96NY7 704 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 ALG1Q9BT22 464 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 CYP2D7A0A087X1C5 515 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 NDUFA8P51970 172 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 CHAF1AQ13111 956 aaPredicted RBP15.62■□□□□ 0.09
VPS54-203ENST00000409558 IL17RAQ96F46 866 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 PRDM10Q9NQV6 1147 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 KCNJ14Q9UNX9 436 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 C5P01031 1676 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 OVOS2A0A0G2JMS6 1433 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 KIF28PB7ZC32 967 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 FOXP2O15409 715 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 GYG1P46976 350 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 ANTXR2P58335 489 aa15.62■□□□□ 0.09
VPS54-203ENST00000409558 EXOSC10Q01780 885 aaKnown RBP15.62■□□□□ 0.09
VPS54-203ENST00000409558 LMO7Q8WWI1 1683 aa15.61■□□□□ 0.09
VPS54-203ENST00000409558 GOLGA6L6A8MZA4 724 aa15.61■□□□□ 0.09
VPS54-203ENST00000409558 PDE6AP16499 860 aa15.61■□□□□ 0.09
VPS54-203ENST00000409558 HMGN5P82970 282 aaKnown RBP15.61■□□□□ 0.09
VPS54-203ENST00000409558 ZBTB9Q96C00 473 aa15.61■□□□□ 0.09
VPS54-203ENST00000409558 ZNF396Q96N95 335 aaPredicted RBP15.61■□□□□ 0.09
VPS54-203ENST00000409558 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.61■□□□□ 0.09
VPS54-203ENST00000409558 V9GYY5 206 aaPredicted RBP15.61■□□□□ 0.09
VPS54-203ENST00000409558 CARMIL3Q8ND23 1372 aa15.61■□□□□ 0.09
VPS54-203ENST00000409558 CYP19A1P11511 503 aaPredicted RBP15.61■□□□□ 0.09
VPS54-203ENST00000409558 UVSSAQ2YD98 709 aa15.61■□□□□ 0.09
VPS54-203ENST00000409558 UBN2Q6ZU65 1347 aa15.6■□□□□ 0.09
VPS54-203ENST00000409558 PDE8BO95263 885 aa15.6■□□□□ 0.09
VPS54-203ENST00000409558 TPM2P07951 284 aa15.6■□□□□ 0.09
VPS54-203ENST00000409558 ZSCAN16Q9H4T2 348 aaPredicted RBP15.6■□□□□ 0.09
VPS54-203ENST00000409558 LRRFIP1Q32MZ4 808 aaKnown RBP15.6■□□□□ 0.09
VPS54-203ENST00000409558 RIPOR2Q9Y4F9 1068 aa15.6■□□□□ 0.09
VPS54-203ENST00000409558 GOLGA8AA7E2F4 631 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms