RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TRAF5O00463 557 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 EVI5O60447 810 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 SCNN1DP51172 638 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 GPSM2P81274 684 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 GRM1Q13255 1194 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 GPC2Q8N158 579 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 ZBTB38Q8NAP3 1195 aaPredicted RBP11.58□□□□□ -0.56
VPS53-203ENST00000401468 CWC25Q9NXE8 425 aaPredicted RBP11.58□□□□□ -0.56
VPS53-203ENST00000401468 CDHR2Q9BYE9 1310 aa11.58□□□□□ -0.56
VPS53-203ENST00000401468 YDJCA8MPS7 323 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 PLIN1O60240 522 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 PCCAP05165 728 aaPredicted RBP11.57□□□□□ -0.56
VPS53-203ENST00000401468 GMPSP49915 693 aaPredicted RBP11.57□□□□□ -0.56
VPS53-203ENST00000401468 MAP3K9P80192 1104 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 MLLT1Q03111 559 aaPredicted RBP11.57□□□□□ -0.56
VPS53-203ENST00000401468 CXCL9Q07325 125 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 C20orf194Q5TEA3 1177 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 LDHDQ86WU2 507 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 TMEM57Q8N5G2 664 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 BBXQ8WY36 941 aaPredicted RBP11.57□□□□□ -0.56
VPS53-203ENST00000401468 USP44Q9H0E7 712 aa11.57□□□□□ -0.56
VPS53-203ENST00000401468 NSFL1CQ9UNZ2 370 aaKnown RBP11.57□□□□□ -0.56
VPS53-203ENST00000401468 C6orf229H3BNL8 230 aa11.56□□□□□ -0.56
VPS53-203ENST00000401468 GRM8O00222 908 aa11.56□□□□□ -0.56
VPS53-203ENST00000401468 ITGBL1O95965 494 aaPredicted RBP11.56□□□□□ -0.56
VPS53-203ENST00000401468 LMOD1P29536 600 aaPredicted RBP11.56□□□□□ -0.56
VPS53-203ENST00000401468 MVPQ14764 893 aaKnown RBP11.56□□□□□ -0.56
VPS53-203ENST00000401468 SLC4A10Q6U841 1118 aa11.56□□□□□ -0.56
VPS53-203ENST00000401468 SP8Q8IXZ3 490 aa11.56□□□□□ -0.56
VPS53-203ENST00000401468 PLA2G12BQ9BX93 195 aa11.56□□□□□ -0.56
VPS53-203ENST00000401468 TMX4Q9H1E5 349 aaPredicted RBP11.56□□□□□ -0.56
VPS53-203ENST00000401468 POLLQ9UGP5 575 aa11.56□□□□□ -0.56
VPS53-203ENST00000401468 SUPT16HQ9Y5B9 1047 aaKnown RBP11.56□□□□□ -0.56
VPS53-203ENST00000401468 PASKQ96RG2 1323 aa11.56□□□□□ -0.56
VPS53-203ENST00000401468 MYH13Q9UKX3 1938 aa11.55□□□□□ -0.56
VPS53-203ENST00000401468 ZBTB7BO15156 539 aaPredicted RBP11.55□□□□□ -0.56
VPS53-203ENST00000401468 CC2D2BQ6DHV5 1058 aa11.55□□□□□ -0.56
VPS53-203ENST00000401468 FTSJ3Q8IY81 847 aaKnown RBP11.55□□□□□ -0.56
VPS53-203ENST00000401468 CNTROBQ8N137 903 aa11.55□□□□□ -0.56
VPS53-203ENST00000401468 PANK1Q8TE04 598 aa11.55□□□□□ -0.56
VPS53-203ENST00000401468 CLUAP1Q96AJ1 413 aa11.55□□□□□ -0.56
VPS53-203ENST00000401468 AKAP11Q9UKA4 1901 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 BBOX1O75936 387 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 EGFRP00533 1210 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 RGS19P49795 217 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 FOSBP53539 338 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 TRPM4Q8TD43 1214 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 KAZALD1Q96I82 304 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 ZNF408Q9H9D4 720 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 PRDM10Q9NQV6 1147 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 ZNRF3Q9ULT6 936 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 SCAF8Q9UPN6 1271 aaKnown RBP11.54□□□□□ -0.56
VPS53-203ENST00000401468 RTL9Q8NET4 1388 aa11.54□□□□□ -0.56
VPS53-203ENST00000401468 UFL1O94874 794 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 NBPF7P0C2Y1 421 aaPredicted RBP11.53□□□□□ -0.56
VPS53-203ENST00000401468 VEGFBP49765 207 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 KIAA2012Q0VF49 1180 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 SF3B3Q15393 1217 aaKnown RBP11.53□□□□□ -0.56
VPS53-203ENST00000401468 RBM26Q5T8P6 1007 aaKnown RBP11.53□□□□□ -0.56
VPS53-203ENST00000401468 CIAPIN1Q6FI81 312 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 PAXIP1Q6ZW49 1069 aaPredicted RBP11.53□□□□□ -0.56
VPS53-203ENST00000401468 UBE3BQ7Z3V4 1068 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 MEIS3Q99687 375 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 RTFDC1Q9BY42 306 aaPredicted RBP11.53□□□□□ -0.56
VPS53-203ENST00000401468 GLIS2Q9BZE0 524 aaPredicted RBP11.53□□□□□ -0.56
VPS53-203ENST00000401468 EMILIN3Q9NT22 766 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 GPRC5DQ9NZD1 345 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 ABT1Q9ULW3 272 aaKnown RBP11.53□□□□□ -0.56
VPS53-203ENST00000401468 DDX19BQ9UMR2 479 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 ECM29Q5VYK3 1845 aa11.53□□□□□ -0.56
VPS53-203ENST00000401468 TMEM88BA6NKF7 163 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 PSMD14O00487 310 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 HRO43593 1189 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 ECE2O60344 883 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 CSF1RP07333 972 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 GNAI3P08754 354 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 HSP90B1P14625 803 aaKnown RBP11.52□□□□□ -0.57
VPS53-203ENST00000401468 HIRAP54198 1017 aaPredicted RBP11.52□□□□□ -0.57
VPS53-203ENST00000401468 RPS8P62241 208 aaKnown RBP11.52□□□□□ -0.57
VPS53-203ENST00000401468 FOXO4P98177 505 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 AAMPQ13685 434 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 WASHC4Q2M389 1173 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 RABL6Q3YEC7 729 aaPredicted RBP11.52□□□□□ -0.57
VPS53-203ENST00000401468 SAMD7Q7Z3H4 446 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 SUPT20HQ8NEM7 779 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 ABHD8Q96I13 439 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 GREM2Q9H772 168 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 ZBTB40Q9NUA8 1239 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 ANKIB1Q9P2G1 1089 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 COG6Q9Y2V7 657 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 ASTN2O75129 1339 aaPredicted RBP11.52□□□□□ -0.57
VPS53-203ENST00000401468 CNTNAP1P78357 1384 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 PDE4DIPQ5VU43 2346 aa11.52□□□□□ -0.57
VPS53-203ENST00000401468 FOXN1O15353 648 aa11.51□□□□□ -0.57
VPS53-203ENST00000401468 PDE8AO60658 829 aa11.51□□□□□ -0.57
VPS53-203ENST00000401468 MTX1Q13505 466 aa11.51□□□□□ -0.57
VPS53-203ENST00000401468 TBC1D10BQ4KMP7 808 aaPredicted RBP11.51□□□□□ -0.57
VPS53-203ENST00000401468 PNMA8AQ86V59 439 aaPredicted RBP11.51□□□□□ -0.57
VPS53-203ENST00000401468 ITPRIPQ8IWB1 547 aa11.51□□□□□ -0.57
VPS53-203ENST00000401468 TBC1D16Q8TBP0 767 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms