RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 SSBP05455 408 aaKnown RBP eCLIP16.81■□□□□ 0.28
TCOF1-202ENST00000377797 FILIP1Q7Z7B0 1213 aa16.81■□□□□ 0.28
TCOF1-202ENST00000377797 USPL1Q5W0Q7 1092 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 CTAGE5O15320 804 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 RBM17Q96I25 401 aaKnown RBP16.8■□□□□ 0.28
TCOF1-202ENST00000377797 ZKSCAN3Q9BRR0 538 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 TM6SF1Q9BZW5 370 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 ATG3Q9NT62 314 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 PICALMQ13492 652 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 EPHA10Q5JZY3 1008 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 ZHX3Q9H4I2 956 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 ESPNB1AK53 854 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 STIM1Q13586 685 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 GIMAP6Q6P9H5 292 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 TRPC5Q9UL62 973 aaPredicted RBP16.8■□□□□ 0.28
TCOF1-202ENST00000377797 NRKQ7Z2Y5 1582 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 SSH2Q76I76 1423 aa16.8■□□□□ 0.28
TCOF1-202ENST00000377797 PDE8BO95263 885 aa16.79■□□□□ 0.28
TCOF1-202ENST00000377797 CCDC102BQ68D86 513 aa16.79■□□□□ 0.28
TCOF1-202ENST00000377797 PANK2Q9BZ23 570 aa16.79■□□□□ 0.28
TCOF1-202ENST00000377797 THRAP3Q9Y2W1 955 aaKnown RBP16.79■□□□□ 0.28
TCOF1-202ENST00000377797 MAGEC2Q9UBF1 373 aaPredicted RBP16.79■□□□□ 0.28
TCOF1-202ENST00000377797 QTRT2Q9H974 415 aaKnown RBP16.79■□□□□ 0.28
TCOF1-202ENST00000377797 ADORA1P30542 326 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 CNNM3Q8NE01 707 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 USP25Q9UHP3 1055 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 H7C1W4 665 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 R3HCC1Q9Y3T6 440 aaKnown RBP16.78■□□□□ 0.28
TCOF1-202ENST00000377797 DSCC1Q9BVC3 393 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 NCOA5Q9HCD5 579 aaKnown RBP16.78■□□□□ 0.28
TCOF1-202ENST00000377797 WWC3Q9ULE0 1092 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 CIAO1O76071 339 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 GPR108Q9NPR9 543 aa16.78■□□□□ 0.28
TCOF1-202ENST00000377797 SMTNL1A8MU46 457 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 PLCG2P16885 1265 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 ZNF76P36508 570 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 MTX1Q13505 466 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 USP32Q8NFA0 1604 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 APBA3O96018 575 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 BIN1O00499 593 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 GGA1Q9UJY5 639 aa16.77■□□□□ 0.28
TCOF1-202ENST00000377797 REREQ9P2R6 1566 aa16.77■□□□□ 0.27
TCOF1-202ENST00000377797 ERVV-1B6SEH8 477 aa16.77■□□□□ 0.27
TCOF1-202ENST00000377797 EPS15P42566 896 aa16.77■□□□□ 0.27
TCOF1-202ENST00000377797 DACT1Q9NYF0 836 aa16.77■□□□□ 0.27
TCOF1-202ENST00000377797 BCAMP50895 628 aa16.76■□□□□ 0.27
TCOF1-202ENST00000377797 RASEFQ8IZ41 740 aa16.76■□□□□ 0.27
TCOF1-202ENST00000377797 PHKA1P46020 1223 aa16.76■□□□□ 0.27
TCOF1-202ENST00000377797 GYG1P46976 350 aa16.76■□□□□ 0.27
TCOF1-202ENST00000377797 HSP90AA2PQ14568 343 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-202ENST00000377797 BMP2KQ9NSY1 1161 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-202ENST00000377797 ANGEL1Q9UNK9 670 aaKnown RBP16.76■□□□□ 0.27
TCOF1-202ENST00000377797 HLFQ16534 295 aa16.76■□□□□ 0.27
TCOF1-202ENST00000377797 LSG1Q9H089 658 aaKnown RBP16.76■□□□□ 0.27
TCOF1-202ENST00000377797 PRDM1O75626 825 aa16.76■□□□□ 0.27
TCOF1-202ENST00000377797 CCDC12Q8WUD4 166 aaPredicted RBP16.76■□□□□ 0.27
TCOF1-202ENST00000377797 ADCY9O60503 1353 aa16.76■□□□□ 0.27
TCOF1-202ENST00000377797 ZNF165P49910 485 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 DHX8Q14562 1220 aaKnown RBP16.75■□□□□ 0.27
TCOF1-202ENST00000377797 CCDC178Q5BJE1 867 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 LRSAM1Q6UWE0 723 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 KCNG4Q8TDN1 519 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 EYA3Q99504 573 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 E7EWF7 191 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 TMEM87BQ96K49 555 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 CABP5Q9NP86 173 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 HSPD1P10809 573 aaKnown RBP16.75■□□□□ 0.27
TCOF1-202ENST00000377797 GNAQP50148 359 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 CHRNDQ07001 517 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 KLHL10Q6JEL2 608 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 FAM173BQ6P4H8 233 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 WDR66Q8TBY9 1149 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 PI4K2BQ8TCG2 481 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 SEC31BQ9NQW1 1179 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 PALLDQ8WX93 1383 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 PDE6AP16499 860 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 TTLL5Q6EMB2 1281 aa16.75■□□□□ 0.27
TCOF1-202ENST00000377797 NBPF26B4DH59 902 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 NBPF14Q5TI25 921 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 NBPF10Q6P3W6 841 aaKnown RBP16.74■□□□□ 0.27
TCOF1-202ENST00000377797 NBPF15Q8N660 670 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 MARCKSP29966 332 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-202ENST00000377797 CFAP100Q494V2 611 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 FAM196AQ6ZSG2 479 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 OGFOD1Q8N543 542 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 MAP4K1Q92918 833 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 CEP89Q96ST8 783 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 AATFQ9NY61 560 aaKnown RBP eCLIP16.74■□□□□ 0.27
TCOF1-202ENST00000377797 PODXL2Q9NZ53 605 aa16.74■□□□□ 0.27
TCOF1-202ENST00000377797 NOC3LQ8WTT2 800 aaKnown RBP16.74■□□□□ 0.27
TCOF1-202ENST00000377797 CBFA2T2O43439 604 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 OFD1O75665 1012 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 CALM1P0DP23 149 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 CALM2P0DP24 149 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 CALM3P0DP25 149 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 TEX11Q8IYF3 940 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 ME3Q16798 604 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 FER1L4A9Z1Z3 1794 aa16.73■□□□□ 0.27
TCOF1-202ENST00000377797 CD2BP2O95400 341 aaKnown RBP16.73■□□□□ 0.27
TCOF1-202ENST00000377797 TTLL11Q8NHH1 800 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms