RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 ATP2B4P23634 1241 aa20.84■□□□□ 0.93
CLDN4-201ENST00000340958 DALRD3Q5D0E6 543 aaKnown RBP20.84■□□□□ 0.93
CLDN4-201ENST00000340958 CHGBP05060 677 aa20.83■□□□□ 0.93
CLDN4-201ENST00000340958 KLRK1P26718 216 aa20.83■□□□□ 0.93
CLDN4-201ENST00000340958 SLC9C2Q5TAH2 1124 aa20.83■□□□□ 0.93
CLDN4-201ENST00000340958 SP8Q8IXZ3 490 aa20.83■□□□□ 0.93
CLDN4-201ENST00000340958 PIH1D3Q9NQM4 214 aaKnown RBP20.83■□□□□ 0.93
CLDN4-201ENST00000340958 DENND2AQ9ULE3 1009 aa20.83■□□□□ 0.93
CLDN4-201ENST00000340958 CCDC171Q6TFL3 1326 aa20.83■□□□□ 0.92
CLDN4-201ENST00000340958 MAP3K12Q12852 859 aa20.83■□□□□ 0.92
CLDN4-201ENST00000340958 SEC62Q99442 399 aaKnown RBP20.83■□□□□ 0.92
CLDN4-201ENST00000340958 LRP2BPQ9P2M1 347 aa20.83■□□□□ 0.92
CLDN4-201ENST00000340958 C6orf229H3BNL8 230 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 RABEP1Q15276 862 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 SLFNL1Q499Z3 407 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 ZMYM1Q5SVZ6 1142 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 ZNF589Q86UQ0 364 aaPredicted RBP20.82■□□□□ 0.92
CLDN4-201ENST00000340958 SLC51AQ86UW1 340 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 ATP6V0A2Q9Y487 856 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 SLX4Q8IY92 1834 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 A0A1B0GUL6 1792 aa20.82■□□□□ 0.92
CLDN4-201ENST00000340958 PTH1RQ03431 593 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 CCDC129Q6ZRS4 1044 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 ZNF804AQ7Z570 1209 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 FBXO33Q7Z6M2 555 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 HSCBQ8IWL3 235 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 TTLL6Q8N841 843 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 ABCF2Q9UG63 623 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 MED23Q9ULK4 1368 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 SEMA3EO15041 775 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 HSPA4P34932 840 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 STYK1Q6J9G0 422 aa20.81■□□□□ 0.92
CLDN4-201ENST00000340958 SLC4A3P48751 1232 aa20.8■□□□□ 0.92
CLDN4-201ENST00000340958 APPBP2Q92624 585 aa20.8■□□□□ 0.92
CLDN4-201ENST00000340958 KIF2CQ99661 725 aa20.8■□□□□ 0.92
CLDN4-201ENST00000340958 ANAPC15P60006 121 aa20.79■□□□□ 0.92
CLDN4-201ENST00000340958 CHAF1AQ13111 956 aaPredicted RBP20.79■□□□□ 0.92
CLDN4-201ENST00000340958 PRPF40BQ6NWY9 871 aaKnown RBP20.79■□□□□ 0.92
CLDN4-201ENST00000340958 CNKSR1Q969H4 720 aa20.79■□□□□ 0.92
CLDN4-201ENST00000340958 ZKSCAN1P17029 563 aaPredicted RBP20.78■□□□□ 0.92
CLDN4-201ENST00000340958 ADD2P35612 726 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 TXNRD3Q86VQ6 643 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 GPR101Q96P66 508 aaPredicted RBP20.78■□□□□ 0.92
CLDN4-201ENST00000340958 PODXL2Q9NZ53 605 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 RAI14Q9P0K7 980 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 RBM8AQ9Y5S9 174 aaKnown RBP20.78■□□□□ 0.92
CLDN4-201ENST00000340958 AKAP11Q9UKA4 1901 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 MAST3O60307 1309 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 PDE6AP16499 860 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 RNF20Q5VTR2 975 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 DPP8Q6V1X1 898 aaPredicted RBP20.78■□□□□ 0.92
CLDN4-201ENST00000340958 MPNDQ8N594 471 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 MAGEB6Q8N7X4 407 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 TBC1D16Q8TBP0 767 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 MAP4K1Q92918 833 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 PALD1Q9ULE6 856 aa20.78■□□□□ 0.92
CLDN4-201ENST00000340958 ZNF532Q9HCE3 1301 aa20.77■□□□□ 0.92
CLDN4-201ENST00000340958 M0R2C6 588 aa20.77■□□□□ 0.92
CLDN4-201ENST00000340958 UBE3CQ15386 1083 aa20.77■□□□□ 0.92
CLDN4-201ENST00000340958 OSBP2Q969R2 916 aa20.77■□□□□ 0.92
CLDN4-201ENST00000340958 ST18O60284 1047 aa20.76■□□□□ 0.91
CLDN4-201ENST00000340958 ERICH6Q7L0X2 663 aa20.76■□□□□ 0.91
CLDN4-201ENST00000340958 ZNF219Q9P2Y4 722 aaPredicted RBP20.76■□□□□ 0.91
CLDN4-201ENST00000340958 POLLQ9UGP5 575 aa20.76■□□□□ 0.91
CLDN4-201ENST00000340958 ARHGAP27Q6ZUM4 889 aa20.76■□□□□ 0.91
CLDN4-201ENST00000340958 TBC1D2Q9BYX2 928 aa20.76■□□□□ 0.91
CLDN4-201ENST00000340958 U3KPZ7 1027 aaPredicted RBP20.76■□□□□ 0.91
CLDN4-201ENST00000340958 G3V3G9 751 aa20.75■□□□□ 0.91
CLDN4-201ENST00000340958 DCAF8Q5TAQ9 597 aa20.75■□□□□ 0.91
CLDN4-201ENST00000340958 C15orf52Q6ZUT6 534 aaKnown RBP20.75■□□□□ 0.91
CLDN4-201ENST00000340958 AIDAQ96BJ3 306 aa20.75■□□□□ 0.91
CLDN4-201ENST00000340958 PUS7LQ9H0K6 701 aaKnown RBP20.75■□□□□ 0.91
CLDN4-201ENST00000340958 OLFM4Q6UX06 510 aa20.74■□□□□ 0.91
CLDN4-201ENST00000340958 ZC3H12CQ9C0D7 883 aaKnown RBP20.74■□□□□ 0.91
CLDN4-201ENST00000340958 JAG2Q9Y219 1238 aa20.74■□□□□ 0.91
CLDN4-201ENST00000340958 RIMBP2O15034 1052 aa20.74■□□□□ 0.91
CLDN4-201ENST00000340958 YY1P25490 414 aa20.74■□□□□ 0.91
CLDN4-201ENST00000340958 NEK4P51957 841 aa20.74■□□□□ 0.91
CLDN4-201ENST00000340958 CREB3L3Q68CJ9 461 aa20.74■□□□□ 0.91
CLDN4-201ENST00000340958 SNX14Q9Y5W7 946 aa20.74■□□□□ 0.91
CLDN4-201ENST00000340958 IRS2Q9Y4H2 1338 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 SBF1O95248 1867 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 FER1L6Q2WGJ9 1857 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 GPAA1O43292 621 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 C21orf2O43822 256 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 NECTIN1Q15223 517 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 SNX21Q969T3 373 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 DSCC1Q9BVC3 393 aa20.73■□□□□ 0.91
CLDN4-201ENST00000340958 PDS5AQ29RF7 1337 aaKnown RBP20.73■□□□□ 0.91
CLDN4-201ENST00000340958 HSPD1P10809 573 aaKnown RBP20.72■□□□□ 0.91
CLDN4-201ENST00000340958 ZGPATQ8N5A5 531 aaKnown RBP20.72■□□□□ 0.91
CLDN4-201ENST00000340958 EYA3Q99504 573 aa20.72■□□□□ 0.91
CLDN4-201ENST00000340958 SLC27A2O14975 620 aa20.71■□□□□ 0.91
CLDN4-201ENST00000340958 APPP05067 770 aa20.71■□□□□ 0.91
CLDN4-201ENST00000340958 CYP7A1P22680 504 aa20.71■□□□□ 0.91
CLDN4-201ENST00000340958 VPS53Q5VIR6 699 aa20.71■□□□□ 0.91
CLDN4-201ENST00000340958 SPTY2D1Q68D10 685 aaPredicted RBP20.71■□□□□ 0.91
CLDN4-201ENST00000340958 TDRD7Q8NHU6 1098 aaKnown RBP20.71■□□□□ 0.91
CLDN4-201ENST00000340958 WDR66Q8TBY9 1149 aa20.71■□□□□ 0.91
CLDN4-201ENST00000340958 CD209Q9NNX6 404 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms