RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 USP44Q9H0E7 712 aa24.53■■□□□ 1.52
LIME1-201ENST00000309546 MROH5Q6ZUA9 1318 aa24.53■■□□□ 1.52
LIME1-201ENST00000309546 GYG1P46976 350 aa24.52■■□□□ 1.52
LIME1-201ENST00000309546 LRRC24Q50LG9 513 aa24.52■■□□□ 1.52
LIME1-201ENST00000309546 CA12O43570 354 aa24.51■■□□□ 1.51
LIME1-201ENST00000309546 CT47B1P0C2W7 299 aaPredicted RBP24.51■■□□□ 1.51
LIME1-201ENST00000309546 FKBP1BP68106 108 aa24.51■■□□□ 1.51
LIME1-201ENST00000309546 TTLL12Q14166 644 aaPredicted RBP24.51■■□□□ 1.51
LIME1-201ENST00000309546 DLGAP5Q15398 846 aa24.51■■□□□ 1.51
LIME1-201ENST00000309546 METTL24Q5JXM2 366 aa24.51■■□□□ 1.51
LIME1-201ENST00000309546 MOB2Q70IA6 237 aa24.51■■□□□ 1.51
LIME1-201ENST00000309546 APOBEC3FQ8IUX4 373 aaKnown RBP24.51■■□□□ 1.51
LIME1-201ENST00000309546 KLHDC4Q8TBB5 520 aa24.51■■□□□ 1.51
LIME1-201ENST00000309546 NOB1Q9ULX3 412 aaKnown RBP24.51■■□□□ 1.51
LIME1-201ENST00000309546 RIPOR2Q9Y4F9 1068 aa24.51■■□□□ 1.51
LIME1-201ENST00000309546 ARAP2Q8WZ64 1704 aa24.5■■□□□ 1.51
LIME1-201ENST00000309546 SLC10A3P09131 477 aa24.5■■□□□ 1.51
LIME1-201ENST00000309546 NF2P35240 595 aa24.5■■□□□ 1.51
LIME1-201ENST00000309546 HIBADHP31937 336 aaKnown RBP24.49■■□□□ 1.51
LIME1-201ENST00000309546 KIF23Q02241 960 aaPredicted RBP24.49■■□□□ 1.51
LIME1-201ENST00000309546 ZBED3Q96IU2 234 aaPredicted RBP24.49■■□□□ 1.51
LIME1-201ENST00000309546 PCDHAC2Q9Y5I4 1007 aa24.49■■□□□ 1.51
LIME1-201ENST00000309546 AKAP11Q9UKA4 1901 aa24.49■■□□□ 1.51
LIME1-201ENST00000309546 FKBP1AP62942 108 aaKnown RBP24.48■■□□□ 1.51
LIME1-201ENST00000309546 CFAP100Q494V2 611 aa24.48■■□□□ 1.51
LIME1-201ENST00000309546 RASAL3Q86YV0 1011 aa24.48■■□□□ 1.51
LIME1-201ENST00000309546 CASP8AP2Q9UKL3 1982 aa24.47■■□□□ 1.51
LIME1-201ENST00000309546 UBE2Q2LH0YL09 131 aa24.47■■□□□ 1.51
LIME1-201ENST00000309546 VPS37DQ86XT2 251 aa24.47■■□□□ 1.51
LIME1-201ENST00000309546 TDRD7Q8NHU6 1098 aaKnown RBP24.47■■□□□ 1.51
LIME1-201ENST00000309546 FAM84BQ96KN1 310 aaPredicted RBP24.47■■□□□ 1.51
LIME1-201ENST00000309546 FAM205AQ6ZU69 1335 aa24.46■■□□□ 1.51
LIME1-201ENST00000309546 RBM5P52756 815 aaKnown RBP eCLIP24.46■■□□□ 1.51
LIME1-201ENST00000309546 PRKG1Q13976 671 aa24.46■■□□□ 1.51
LIME1-201ENST00000309546 MFSD14BQ5SR56 506 aa24.46■■□□□ 1.51
LIME1-201ENST00000309546 API5Q9BZZ5 524 aaKnown RBP24.46■■□□□ 1.51
LIME1-201ENST00000309546 IQSEC3Q9UPP2 1182 aaPredicted RBP24.46■■□□□ 1.51
LIME1-201ENST00000309546 COL1A1P02452 1464 aaPredicted RBP24.45■■□□□ 1.51
LIME1-201ENST00000309546 CLRN2A0PK11 232 aa24.45■■□□□ 1.5
LIME1-201ENST00000309546 MYO1BO43795 1136 aa24.45■■□□□ 1.5
LIME1-201ENST00000309546 PDE8BO95263 885 aa24.45■■□□□ 1.5
LIME1-201ENST00000309546 UBTFL1P0CB47 393 aaPredicted RBP24.45■■□□□ 1.5
LIME1-201ENST00000309546 MTMR14Q8NCE2 650 aa24.45■■□□□ 1.5
LIME1-201ENST00000309546 VGLL2Q8N8G2 317 aa24.44■■□□□ 1.5
LIME1-201ENST00000309546 VEZTQ9HBM0 779 aa24.44■■□□□ 1.5
LIME1-201ENST00000309546 SPDYE2BA6NHP3 402 aa24.43■■□□□ 1.5
LIME1-201ENST00000309546 FRAT2O75474 233 aaPredicted RBP24.43■■□□□ 1.5
LIME1-201ENST00000309546 SPDYE6P0CI01 402 aa24.43■■□□□ 1.5
LIME1-201ENST00000309546 RARSP54136 660 aaKnown RBP24.43■■□□□ 1.5
LIME1-201ENST00000309546 CHAF1AQ13111 956 aaPredicted RBP24.43■■□□□ 1.5
LIME1-201ENST00000309546 CAVIN4Q5BKX8 364 aa24.43■■□□□ 1.5
LIME1-201ENST00000309546 DEFB129Q9H1M3 183 aa24.43■■□□□ 1.5
LIME1-201ENST00000309546 TTF2Q9UNY4 1162 aaKnown RBP24.43■■□□□ 1.5
LIME1-201ENST00000309546 MYH13Q9UKX3 1938 aa24.43■■□□□ 1.5
LIME1-201ENST00000309546 RFX5P48382 616 aaPredicted RBP24.42■■□□□ 1.5
LIME1-201ENST00000309546 PRMT6Q96LA8 375 aaPredicted RBP24.42■■□□□ 1.5
LIME1-201ENST00000309546 AOX1Q06278 1338 aa24.41■■□□□ 1.5
LIME1-201ENST00000309546 KIF16BQ96L93 1317 aa24.41■■□□□ 1.5
LIME1-201ENST00000309546 EYA2O00167 538 aa24.41■■□□□ 1.5
LIME1-201ENST00000309546 ARMC9Q7Z3E5 817 aa24.41■■□□□ 1.5
LIME1-201ENST00000309546 FBXO33Q7Z6M2 555 aa24.41■■□□□ 1.5
LIME1-201ENST00000309546 CSRNP1Q96S65 589 aa24.41■■□□□ 1.5
LIME1-201ENST00000309546 TRPA1O75762 1119 aa24.4■■□□□ 1.5
LIME1-201ENST00000309546 IFIT1P09914 478 aaKnown RBP24.4■■□□□ 1.5
LIME1-201ENST00000309546 PUM3Q15397 648 aaKnown RBP24.4■■□□□ 1.5
LIME1-201ENST00000309546 RNF186Q9NXI6 227 aa24.4■■□□□ 1.5
LIME1-201ENST00000309546 ANGEL1Q9UNK9 670 aaKnown RBP24.4■■□□□ 1.5
LIME1-201ENST00000309546 FZD1Q9UP38 647 aa24.4■■□□□ 1.5
LIME1-201ENST00000309546 LRRFIP2Q9Y608 721 aaKnown RBP24.4■■□□□ 1.5
LIME1-201ENST00000309546 BCAMP50895 628 aa24.39■■□□□ 1.49
LIME1-201ENST00000309546 PTPN12Q05209 780 aaKnown RBP24.39■■□□□ 1.49
LIME1-201ENST00000309546 MKRN3Q13064 507 aaKnown RBP24.39■■□□□ 1.49
LIME1-201ENST00000309546 ABHD8Q96I13 439 aa24.39■■□□□ 1.49
LIME1-201ENST00000309546 SIL1Q9H173 461 aa24.39■■□□□ 1.49
LIME1-201ENST00000309546 SAGE1Q9NXZ1 904 aa24.39■■□□□ 1.49
LIME1-201ENST00000309546 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.39■■□□□ 1.49
LIME1-201ENST00000309546 PPP2R3BQ9Y5P8 575 aa24.39■■□□□ 1.49
LIME1-201ENST00000309546 MIER1Q8N108 512 aa24.38■■□□□ 1.49
LIME1-201ENST00000309546 SERPINA10Q9UK55 444 aa24.38■■□□□ 1.49
LIME1-201ENST00000309546 SSC5DA1L4H1 1573 aa24.37■■□□□ 1.49
LIME1-201ENST00000309546 SLC5A1P13866 664 aa24.37■■□□□ 1.49
LIME1-201ENST00000309546 REM2Q8IYK8 340 aaPredicted RBP24.37■■□□□ 1.49
LIME1-201ENST00000309546 MEIS3Q99687 375 aa24.37■■□□□ 1.49
LIME1-201ENST00000309546 HDAC5Q9UQL6 1122 aa24.37■■□□□ 1.49
LIME1-201ENST00000309546 FGFR2P21802 821 aa24.36■■□□□ 1.49
LIME1-201ENST00000309546 CRKP46108 304 aa24.36■■□□□ 1.49
LIME1-201ENST00000309546 GRIK5Q16478 980 aa24.36■■□□□ 1.49
LIME1-201ENST00000309546 DIEXFQ68CQ4 756 aaKnown RBP24.36■■□□□ 1.49
LIME1-201ENST00000309546 TBC1D22AQ8WUA7 517 aa24.36■■□□□ 1.49
LIME1-201ENST00000309546 TDRD3Q9H7E2 651 aaKnown RBP24.36■■□□□ 1.49
LIME1-201ENST00000309546 ATG9AQ7Z3C6 839 aa24.35■■□□□ 1.49
LIME1-201ENST00000309546 ZNF70Q9UC06 446 aaPredicted RBP24.35■■□□□ 1.49
LIME1-201ENST00000309546 HNRNPUQ00839 825 aaKnown RBP eCLIP24.34■■□□□ 1.49
LIME1-201ENST00000309546 RASA3Q14644 834 aa24.34■■□□□ 1.49
LIME1-201ENST00000309546 SPDYE2Q495Y8 402 aa24.34■■□□□ 1.49
LIME1-201ENST00000309546 DZIP1LQ8IYY4 767 aaKnown RBP24.34■■□□□ 1.49
LIME1-201ENST00000309546 ARHGAP45Q92619 1136 aa24.34■■□□□ 1.49
LIME1-201ENST00000309546 FRAT1Q92837 279 aaPredicted RBP24.34■■□□□ 1.49
LIME1-201ENST00000309546 PPP1R12BO60237 982 aaPredicted RBP24.33■■□□□ 1.49
LIME1-201ENST00000309546 DGKZQ13574 1117 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms