RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 JAG2Q9Y219 1238 aa16.14■□□□□ 0.17
CD44-203ENST00000278386 IRS2Q9Y4H2 1338 aa16.14■□□□□ 0.17
CD44-203ENST00000278386 MKRN3Q13064 507 aaKnown RBP16.13■□□□□ 0.17
CD44-203ENST00000278386 DLGAP5Q15398 846 aa16.13■□□□□ 0.17
CD44-203ENST00000278386 C15orf52Q6ZUT6 534 aaKnown RBP16.13■□□□□ 0.17
CD44-203ENST00000278386 ARMC9Q7Z3E5 817 aa16.12■□□□□ 0.17
CD44-203ENST00000278386 CERS5Q8N5B7 392 aa16.12■□□□□ 0.17
CD44-203ENST00000278386 SUCLG2Q96I99 432 aa16.12■□□□□ 0.17
CD44-203ENST00000278386 OTOFQ9HC10 1997 aa16.12■□□□□ 0.17
CD44-203ENST00000278386 LAMB1P07942 1786 aa16.11■□□□□ 0.17
CD44-203ENST00000278386 MYO1BO43795 1136 aa16.11■□□□□ 0.17
CD44-203ENST00000278386 IL1R1P14778 569 aa16.11■□□□□ 0.17
CD44-203ENST00000278386 CFAP100Q494V2 611 aa16.11■□□□□ 0.17
CD44-203ENST00000278386 ZBED3Q96IU2 234 aaPredicted RBP16.11■□□□□ 0.17
CD44-203ENST00000278386 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.11■□□□□ 0.17
CD44-203ENST00000278386 CLRN2A0PK11 232 aa16.1■□□□□ 0.17
CD44-203ENST00000278386 RBM5P52756 815 aaKnown RBP eCLIP16.1■□□□□ 0.17
CD44-203ENST00000278386 VEZTQ9HBM0 779 aa16.1■□□□□ 0.17
CD44-203ENST00000278386 ANGEL1Q9UNK9 670 aaKnown RBP16.1■□□□□ 0.17
CD44-203ENST00000278386 PCDHAC2Q9Y5I4 1007 aa16.1■□□□□ 0.17
CD44-203ENST00000278386 ZNF521Q96K83 1311 aa16.1■□□□□ 0.17
CD44-203ENST00000278386 SSC5DA1L4H1 1573 aa16.09■□□□□ 0.17
CD44-203ENST00000278386 FKBP1AP62942 108 aaKnown RBP16.09■□□□□ 0.17
CD44-203ENST00000278386 MLLT1Q03111 559 aaPredicted RBP16.09■□□□□ 0.17
CD44-203ENST00000278386 DEFB129Q9H1M3 183 aa16.09■□□□□ 0.17
CD44-203ENST00000278386 SPDYE2BA6NHP3 402 aa16.08■□□□□ 0.16
CD44-203ENST00000278386 NBPF7P0C2Y1 421 aaPredicted RBP16.08■□□□□ 0.16
CD44-203ENST00000278386 SPDYE6P0CI01 402 aa16.08■□□□□ 0.16
CD44-203ENST00000278386 PTPN12Q05209 780 aaKnown RBP16.08■□□□□ 0.16
CD44-203ENST00000278386 SREBF2Q12772 1141 aa16.08■□□□□ 0.16
CD44-203ENST00000278386 UBE4AQ14139 1066 aa16.08■□□□□ 0.16
CD44-203ENST00000278386 MTMR14Q8NCE2 650 aa16.08■□□□□ 0.16
CD44-203ENST00000278386 PUS3Q9BZE2 481 aaKnown RBP16.08■□□□□ 0.16
CD44-203ENST00000278386 BICC1Q9H694 974 aaKnown RBP16.08■□□□□ 0.16
CD44-203ENST00000278386 FZD1Q9UP38 647 aa16.08■□□□□ 0.16
CD44-203ENST00000278386 PPP2R3BQ9Y5P8 575 aa16.08■□□□□ 0.16
CD44-203ENST00000278386 E9PSI1 815 aa16.07■□□□□ 0.16
CD44-203ENST00000278386 GYG1P46976 350 aa16.07■□□□□ 0.16
CD44-203ENST00000278386 MFSD14BQ5SR56 506 aa16.07■□□□□ 0.16
CD44-203ENST00000278386 CTU1Q7Z7A3 348 aaKnown RBP16.07■□□□□ 0.16
CD44-203ENST00000278386 MRPL50Q8N5N7 158 aaKnown RBP16.07■□□□□ 0.16
CD44-203ENST00000278386 PTPRCP08575 1304 aa16.07■□□□□ 0.16
CD44-203ENST00000278386 UTYO14607 1347 aa16.06■□□□□ 0.16
CD44-203ENST00000278386 FAM205AQ6ZU69 1335 aa16.06■□□□□ 0.16
CD44-203ENST00000278386 MROH5Q6ZUA9 1318 aa16.06■□□□□ 0.16
CD44-203ENST00000278386 PPP1R12BO60237 982 aaPredicted RBP16.06■□□□□ 0.16
CD44-203ENST00000278386 TBC1D8O95759 1140 aa16.06■□□□□ 0.16
CD44-203ENST00000278386 HIBADHP31937 336 aaKnown RBP16.06■□□□□ 0.16
CD44-203ENST00000278386 METTL24Q5JXM2 366 aa16.06■□□□□ 0.16
CD44-203ENST00000278386 VPS37DQ86XT2 251 aa16.06■□□□□ 0.16
CD44-203ENST00000278386 KAZALD1Q96I82 304 aa16.06■□□□□ 0.16
CD44-203ENST00000278386 PRMT6Q96LA8 375 aaPredicted RBP16.05■□□□□ 0.16
CD44-203ENST00000278386 TTF2Q9UNY4 1162 aaKnown RBP16.05■□□□□ 0.16
CD44-203ENST00000278386 AOX1Q06278 1338 aa16.04■□□□□ 0.16
CD44-203ENST00000278386 FRAT2O75474 233 aaPredicted RBP16.04■□□□□ 0.16
CD44-203ENST00000278386 TM4SF4P48230 202 aa16.04■□□□□ 0.16
CD44-203ENST00000278386 RGS19P49795 217 aa16.04■□□□□ 0.16
CD44-203ENST00000278386 SOX10P56693 466 aa16.04■□□□□ 0.16
CD44-203ENST00000278386 CHAF1AQ13111 956 aaPredicted RBP16.04■□□□□ 0.16
CD44-203ENST00000278386 SPRYD7Q5W111 196 aa16.04■□□□□ 0.16
CD44-203ENST00000278386 ANKRD44Q8N8A2 993 aa16.04■□□□□ 0.16
CD44-203ENST00000278386 TDRD7Q8NHU6 1098 aaKnown RBP16.04■□□□□ 0.16
CD44-203ENST00000278386 ZNF296Q8WUU4 475 aaPredicted RBP16.04■□□□□ 0.16
CD44-203ENST00000278386 SSH1Q8WYL5 1049 aa16.04■□□□□ 0.16
CD44-203ENST00000278386 FAM84BQ96KN1 310 aaPredicted RBP16.04■□□□□ 0.16
CD44-203ENST00000278386 IQSEC3Q9UPP2 1182 aaPredicted RBP16.04■□□□□ 0.16
CD44-203ENST00000278386 TNFAIP1Q13829 316 aa16.03■□□□□ 0.16
CD44-203ENST00000278386 RABL6Q3YEC7 729 aaPredicted RBP16.03■□□□□ 0.16
CD44-203ENST00000278386 SUPT20HL1Q3ZLR7 823 aa16.03■□□□□ 0.16
CD44-203ENST00000278386 LRRC24Q50LG9 513 aa16.03■□□□□ 0.16
CD44-203ENST00000278386 LDLRAD1Q5T700 205 aa16.03■□□□□ 0.16
CD44-203ENST00000278386 SLC10A4Q96EP9 437 aa16.03■□□□□ 0.16
CD44-203ENST00000278386 RIPOR2Q9Y4F9 1068 aa16.03■□□□□ 0.16
CD44-203ENST00000278386 IREB2P48200 963 aaKnown RBP16.02■□□□□ 0.16
CD44-203ENST00000278386 RASA3Q14644 834 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 MAP3K11Q16584 847 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 CAVIN4Q5BKX8 364 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 NBPF12Q5TAG4 269 aaPredicted RBP16.02■□□□□ 0.16
CD44-203ENST00000278386 KLHDC4Q8TBB5 520 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 WNK4Q96J92 1243 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 CLMNQ96JQ2 1002 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 SMC4Q9NTJ3 1288 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 SERPINA10Q9UK55 444 aa16.02■□□□□ 0.16
CD44-203ENST00000278386 MANSC4A6NHS7 340 aaPredicted RBP16.01■□□□□ 0.15
CD44-203ENST00000278386 GPR25O00155 361 aa16.01■□□□□ 0.15
CD44-203ENST00000278386 ZBTB48P10074 688 aaPredicted RBP16.01■□□□□ 0.15
CD44-203ENST00000278386 CRKP46108 304 aa16.01■□□□□ 0.15
CD44-203ENST00000278386 SLFN5Q08AF3 891 aa16.01■□□□□ 0.15
CD44-203ENST00000278386 SPDYE2Q495Y8 402 aa16.01■□□□□ 0.15
CD44-203ENST00000278386 TDRD3Q9H7E2 651 aaKnown RBP16.01■□□□□ 0.15
CD44-203ENST00000278386 ZNF70Q9UC06 446 aaPredicted RBP16.01■□□□□ 0.15
CD44-203ENST00000278386 AK9Q5TCS8 1911 aa16.01■□□□□ 0.15
CD44-203ENST00000278386 ALDH1A1P00352 501 aa16■□□□□ 0.15
CD44-203ENST00000278386 DZIP1LQ8IYY4 767 aaKnown RBP16■□□□□ 0.15
CD44-203ENST00000278386 HPS5Q9UPZ3 1129 aa16■□□□□ 0.15
CD44-203ENST00000278386 TCP10L2B9ZVM9 353 aa15.99■□□□□ 0.15
CD44-203ENST00000278386 FKTNO75072 461 aa15.99■□□□□ 0.15
CD44-203ENST00000278386 PDE8BO95263 885 aa15.99■□□□□ 0.15
CD44-203ENST00000278386 TNNI2P48788 182 aa15.99■□□□□ 0.15
CD44-203ENST00000278386 PKN2Q16513 984 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms