RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 HDAC5Q9UQL6 1122 aa20.14■□□□□ 0.81
USE1-201ENST00000263897 IPO8O15397 1037 aaKnown RBP20.13■□□□□ 0.81
USE1-201ENST00000263897 AOC2O75106 756 aa20.13■□□□□ 0.81
USE1-201ENST00000263897 PDE8BO95263 885 aa20.13■□□□□ 0.81
USE1-201ENST00000263897 INTS3Q68E01 1043 aaKnown RBP20.13■□□□□ 0.81
USE1-201ENST00000263897 VGLL2Q8N8G2 317 aa20.13■□□□□ 0.81
USE1-201ENST00000263897 ZBED3Q96IU2 234 aaPredicted RBP20.13■□□□□ 0.81
USE1-201ENST00000263897 FAM205AQ6ZU69 1335 aa20.12■□□□□ 0.81
USE1-201ENST00000263897 CTCFP49711 727 aaPredicted RBP20.12■□□□□ 0.81
USE1-201ENST00000263897 PTPN12Q05209 780 aaKnown RBP20.12■□□□□ 0.81
USE1-201ENST00000263897 FBXO33Q7Z6M2 555 aa20.12■□□□□ 0.81
USE1-201ENST00000263897 SCAF8Q9UPN6 1271 aaKnown RBP20.12■□□□□ 0.81
USE1-201ENST00000263897 EYA2O00167 538 aa20.11■□□□□ 0.81
USE1-201ENST00000263897 BCAR3O75815 825 aa20.11■□□□□ 0.81
USE1-201ENST00000263897 DLGAP5Q15398 846 aa20.11■□□□□ 0.81
USE1-201ENST00000263897 MTMR14Q8NCE2 650 aa20.11■□□□□ 0.81
USE1-201ENST00000263897 JAG2Q9Y219 1238 aa20.11■□□□□ 0.81
USE1-201ENST00000263897 RGMBQ6NW40 437 aa20.1■□□□□ 0.81
USE1-201ENST00000263897 LRRFIP2Q9Y608 721 aaKnown RBP20.1■□□□□ 0.81
USE1-201ENST00000263897 F8W031 263 aaPredicted RBP20.09■□□□□ 0.81
USE1-201ENST00000263897 FKBP1BP68106 108 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 CAVIN4Q5BKX8 364 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 PRAMEF18Q5VWM3 479 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 VPS37DQ86XT2 251 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 MEIS3Q99687 375 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 BEGAINQ9BUH8 593 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 PRDM10Q9NQV6 1147 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 THSD7BQ9C0I4 1608 aa20.09■□□□□ 0.81
USE1-201ENST00000263897 TRIM27P14373 513 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 FGFR2P21802 821 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 NOGQ13253 232 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 MFSD14BQ5SR56 506 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 ATF7IPQ6VMQ6 1270 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 ATG9AQ7Z3C6 839 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 FRAT1Q92837 279 aaPredicted RBP20.08■□□□□ 0.81
USE1-201ENST00000263897 CCDC102AQ96A19 550 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 FBXO3Q9UK99 471 aa20.08■□□□□ 0.81
USE1-201ENST00000263897 FAM155AB1AL88 458 aaPredicted RBP20.07■□□□□ 0.8
USE1-201ENST00000263897 GNAI3P08754 354 aa20.07■□□□□ 0.8
USE1-201ENST00000263897 IFIT1P09914 478 aaKnown RBP20.07■□□□□ 0.8
USE1-201ENST00000263897 ZNF157P51786 506 aaPredicted RBP20.07■□□□□ 0.8
USE1-201ENST00000263897 LBX1P52954 281 aa20.07■□□□□ 0.8
USE1-201ENST00000263897 PUM3Q15397 648 aaKnown RBP20.07■□□□□ 0.8
USE1-201ENST00000263897 CFAP100Q494V2 611 aa20.07■□□□□ 0.8
USE1-201ENST00000263897 APOBEC3FQ8IUX4 373 aaKnown RBP20.07■□□□□ 0.8
USE1-201ENST00000263897 TNS4Q8IZW8 715 aa20.07■□□□□ 0.8
USE1-201ENST00000263897 PRMT6Q96LA8 375 aaPredicted RBP20.07■□□□□ 0.8
USE1-201ENST00000263897 IQSEC3Q9UPP2 1182 aaPredicted RBP20.07■□□□□ 0.8
USE1-201ENST00000263897 PCDHAC2Q9Y5I4 1007 aa20.07■□□□□ 0.8
USE1-201ENST00000263897 CIAO1O76071 339 aa20.06■□□□□ 0.8
USE1-201ENST00000263897 HSPA8P11142 646 aaKnown RBP20.06■□□□□ 0.8
USE1-201ENST00000263897 BCAMP50895 628 aa20.06■□□□□ 0.8
USE1-201ENST00000263897 ZIC5Q96T25 663 aa20.06■□□□□ 0.8
USE1-201ENST00000263897 TNNQ9UQP3 1299 aa20.06■□□□□ 0.8
USE1-201ENST00000263897 SPDYE2BA6NHP3 402 aa20.05■□□□□ 0.8
USE1-201ENST00000263897 FRAT2O75474 233 aaPredicted RBP20.05■□□□□ 0.8
USE1-201ENST00000263897 SPDYE6P0CI01 402 aa20.05■□□□□ 0.8
USE1-201ENST00000263897 LPIN2Q92539 896 aa20.05■□□□□ 0.8
USE1-201ENST00000263897 SIL1Q9H173 461 aa20.05■□□□□ 0.8
USE1-201ENST00000263897 CEP126Q9P2H0 1117 aa20.05■□□□□ 0.8
USE1-201ENST00000263897 MYO1BO43795 1136 aa20.04■□□□□ 0.8
USE1-201ENST00000263897 SLC5A1P13866 664 aa20.04■□□□□ 0.8
USE1-201ENST00000263897 NF2P35240 595 aa20.04■□□□□ 0.8
USE1-201ENST00000263897 RBM5P52756 815 aaKnown RBP eCLIP20.04■□□□□ 0.8
USE1-201ENST00000263897 MOB2Q70IA6 237 aa20.04■□□□□ 0.8
USE1-201ENST00000263897 CLUAP1Q96AJ1 413 aa20.04■□□□□ 0.8
USE1-201ENST00000263897 COPRSQ9NQ92 184 aa20.04■□□□□ 0.8
USE1-201ENST00000263897 TTF2Q9UNY4 1162 aaKnown RBP20.04■□□□□ 0.8
USE1-201ENST00000263897 UBE2Q2LH0YL09 131 aa20.03■□□□□ 0.8
USE1-201ENST00000263897 CHAF1AQ13111 956 aaPredicted RBP20.03■□□□□ 0.8
USE1-201ENST00000263897 ZKSCAN2Q63HK3 967 aa20.03■□□□□ 0.8
USE1-201ENST00000263897 TBC1D22AQ8WUA7 517 aa20.03■□□□□ 0.8
USE1-201ENST00000263897 DEFB129Q9H1M3 183 aa20.03■□□□□ 0.8
USE1-201ENST00000263897 SERPINA10Q9UK55 444 aa20.03■□□□□ 0.8
USE1-201ENST00000263897 PA2G4Q9UQ80 394 aaKnown RBP20.03■□□□□ 0.8
USE1-201ENST00000263897 ZBED9Q6R2W3 1325 aa20.02■□□□□ 0.8
USE1-201ENST00000263897 CA12O43570 354 aa20.02■□□□□ 0.8
USE1-201ENST00000263897 SLC10A3P09131 477 aa20.02■□□□□ 0.8
USE1-201ENST00000263897 IL15P40933 162 aaPredicted RBP20.02■□□□□ 0.8
USE1-201ENST00000263897 KIF23Q02241 960 aaPredicted RBP20.02■□□□□ 0.8
USE1-201ENST00000263897 MTX1Q13505 466 aa20.02■□□□□ 0.8
USE1-201ENST00000263897 PAPPA2Q9BXP8 1791 aa20.02■□□□□ 0.8
USE1-201ENST00000263897 CLRN2A0PK11 232 aa20.01■□□□□ 0.79
USE1-201ENST00000263897 TTLL12Q14166 644 aaPredicted RBP20.01■□□□□ 0.79
USE1-201ENST00000263897 GRIK5Q16478 980 aa20.01■□□□□ 0.79
USE1-201ENST00000263897 AOX1Q06278 1338 aa20.01■□□□□ 0.79
USE1-201ENST00000263897 ECM29Q5VYK3 1845 aa20■□□□□ 0.79
USE1-201ENST00000263897 SRGAP3O43295 1099 aa20■□□□□ 0.79
USE1-201ENST00000263897 HDLBPQ00341 1268 aaKnown RBP20■□□□□ 0.79
USE1-201ENST00000263897 ATP2B3Q16720 1220 aa20■□□□□ 0.79
USE1-201ENST00000263897 PPP2R3BQ9Y5P8 575 aa20■□□□□ 0.79
USE1-201ENST00000263897 GNAI2P04899 355 aa19.99■□□□□ 0.79
USE1-201ENST00000263897 CRKP46108 304 aa19.99■□□□□ 0.79
USE1-201ENST00000263897 RASAL3Q86YV0 1011 aa19.99■□□□□ 0.79
USE1-201ENST00000263897 DZIP1LQ8IYY4 767 aaKnown RBP19.99■□□□□ 0.79
USE1-201ENST00000263897 TMEM57Q8N5G2 664 aa19.99■□□□□ 0.79
USE1-201ENST00000263897 MRIQ9BWK5 157 aa19.99■□□□□ 0.79
USE1-201ENST00000263897 VEZTQ9HBM0 779 aa19.99■□□□□ 0.79
USE1-201ENST00000263897 ZNF70Q9UC06 446 aaPredicted RBP19.99■□□□□ 0.79
USE1-201ENST00000263897 TSKSQ9UJT2 592 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms