RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 KLHL30-AS1Q8NEE0 82 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 DNAAF1Q8NEP3 725 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 OR4D6Q8NGJ1 314 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 TMEM163Q8TC26 289 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 DUX3Q96PT4 197 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 IL4I1Q96RQ9 567 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 GABARAPL1Q9H0R8 117 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 HMG20AQ9NP66 347 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 LINC00527Q9UJ94 153 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 IGKV1-9A0A0C4DH69 117 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 LOC107986453A0A1B0GWG9 222 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 ODAMA1E959 279 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 METTL15A6NJ78 407 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 ZAR1LA6NP61 321 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 H0YHG0 523 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 APOL3O95236 402 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 SNRNP70P08621 437 aaKnown RBP15.34■□□□□ 0.05
CLN3-262ENST00000637699 NFYBP25208 207 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 LMO1P25800 156 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 PTGFRP43088 359 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 ZDHHC13Q8IUH4 622 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 PRSS35Q8N3Z0 413 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 CCDC54Q8NEL0 328 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 CHPT1Q8WUD6 406 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 PP6455Q8WZ26 134 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 RFT1Q96AA3 541 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 ADAT3Q96EY9 351 aaPredicted RBP15.34■□□□□ 0.05
CLN3-262ENST00000637699 P2RX4Q99571 388 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 ZFP57Q9NU63 452 aa15.34■□□□□ 0.05
CLN3-262ENST00000637699 ZMAT5Q9UDW3 170 aaKnown RBP15.34■□□□□ 0.05
CLN3-262ENST00000637699 A0A1W2PQL4 384 aaPredicted RBP15.33■□□□□ 0.04
CLN3-262ENST00000637699 SERPINE3A8MV23 424 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 OOSP1A8MZH6 123 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 ZNF44P15621 663 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 RAB25P57735 213 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 PDZK1IP1Q13113 114 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 HES1Q14469 280 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 KRBOX4Q5JUW0 171 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 C12orf73Q69YU5 71 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 OR56B4Q8NH76 319 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 TOMM40LQ969M1 308 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 RPEQ96AT9 228 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 C10orf35Q96D05 121 aa15.33■□□□□ 0.04
CLN3-262ENST00000637699 A0A087X0M5 115 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 IGKV1-12A0A0C4DH73 117 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 A0A1B0GX30 115 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A18PA6NE21 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A16PA6NEW6 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A20PA6NIJ5 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A9PA6NNJ1 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A12PA8MX19 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A5PA8MXJ8 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 IGKV1D-12P01611 117 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 IGHV3-7P01780 117 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 OR2T7P0C7T2 308 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A15PP0C7V4 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A13PP0C7W8 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A14PP0C7W9 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FAM90A24PP0C7X0 464 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 ATF1P18846 271 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 PRKACBP22694 351 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 POLR2IP36954 125 aaKnown RBP15.32■□□□□ 0.04
CLN3-262ENST00000637699 HNF4GQ14541 408 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 THNSL2Q86YJ6 484 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 GID4Q8IVV7 300 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 OR10H4Q8NGA5 316 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 FGGYQ96C11 551 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 COQ2Q96H96 371 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 CIB1Q99828 191 aa15.32■□□□□ 0.04
CLN3-262ENST00000637699 CIB2O75838 187 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 SULT1C4O75897 302 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 UBCP0CG48 685 aaKnown RBP15.31■□□□□ 0.04
CLN3-262ENST00000637699 FCGR1AP12314 374 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 SLC6A1P30531 599 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 KIR3DL2P43630 455 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 SLC35B1P78383 322 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 ATXN7L3Q14CW9 347 aaPredicted RBP15.31■□□□□ 0.04
CLN3-262ENST00000637699 C17orf58Q2M2W7 97 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 LHFPL2Q6ZUX7 228 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 ZNF695Q8IW36 515 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 DRAM1Q8N682 238 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 C5orf56Q8N8D9 126 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 OR9G1Q8NH87 305 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 CENPNQ96H22 339 aaPredicted RBP15.31■□□□□ 0.04
CLN3-262ENST00000637699 WARS2Q9UGM6 360 aaKnown RBP15.31■□□□□ 0.04
CLN3-262ENST00000637699 OAZ3Q9UMX2 235 aa15.31■□□□□ 0.04
CLN3-262ENST00000637699 DYNC2H1Q8NCM8 4307 aaKnown RBP15.31■□□□□ 0.04
CLN3-262ENST00000637699 ZNF729A6NN14 1252 aaPredicted RBP15.3■□□□□ 0.04
CLN3-262ENST00000637699 RAMP3O60896 148 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 OCM2P0CE71 109 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 OCMP0CE72 109 aaPredicted RBP15.3■□□□□ 0.04
CLN3-262ENST00000637699 ZNF20P17024 532 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 TMEM11P17152 192 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 LUMP51884 338 aaPredicted RBP15.3■□□□□ 0.04
CLN3-262ENST00000637699 NKAPLQ5M9Q1 402 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 OR5D18Q8NGL1 313 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 PYDC1Q8WXC3 89 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 LEAP2Q969E1 77 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 RAX2Q96IS3 184 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 KIRREL1Q96J84 757 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms