RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CSN2P05814 226 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 UCHL1P09936 223 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 GTF2F2P13984 249 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 SERPINA2P20848 420 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 GABRA5P31644 462 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 RPS25P62851 125 aaKnown RBP16.98■□□□□ 0.31
CLN3-240ENST00000631023 ZNF273Q14593 569 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 AWAT2Q6E213 333 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 TNFRSF14Q92956 283 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 ZDHHC16Q969W1 377 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 RNASEK-C17orf49H0YIS7 233 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 ARL6IP5O75915 188 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 ZNF728P0DKX0 622 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 CCL3L1P16619 93 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 P2RX3P56373 397 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 BAMBIQ13145 260 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 KRTAP24-1Q3LI83 254 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 PIGYQ3MUY2 71 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 NHLRC3Q5JS37 347 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 GLT8D1Q68CQ7 371 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 GLIPR1L1Q6UWM5 242 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 LINC00596Q86U02 117 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 SPARTQ8N0X7 666 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 FCGR1BQ92637 280 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 MRPS24Q96EL2 167 aaKnown RBP16.97■□□□□ 0.31
CLN3-240ENST00000631023 ZNF48Q96MX3 618 aaPredicted RBP16.97■□□□□ 0.31
CLN3-240ENST00000631023 ZNF714Q96N38 554 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 PPA2Q9H2U2 334 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 HEXA-AS1Q9H8Q6 139 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 SF3B6Q9Y3B4 125 aaKnown RBP16.97■□□□□ 0.31
CLN3-240ENST00000631023 SOX21Q9Y651 276 aaPredicted RBP16.97■□□□□ 0.31
CLN3-240ENST00000631023 LINC00312Q9Y6C7 94 aa16.97■□□□□ 0.31
CLN3-240ENST00000631023 UBE2E1P51965 193 aa16.96■□□□□ 0.31
CLN3-240ENST00000631023 GP2P55259 537 aaKnown RBP16.96■□□□□ 0.31
CLN3-240ENST00000631023 RBM11P57052 281 aaKnown RBP16.96■□□□□ 0.31
CLN3-240ENST00000631023 ERVFRD-1P60508 538 aa16.96■□□□□ 0.31
CLN3-240ENST00000631023 DEFB112Q30KQ8 113 aa16.96■□□□□ 0.31
CLN3-240ENST00000631023 PAN3Q58A45 887 aaKnown RBP16.96■□□□□ 0.31
CLN3-240ENST00000631023 TMEM91Q6ZNR0 172 aa16.96■□□□□ 0.31
CLN3-240ENST00000631023 TPRX1Q8N7U7 411 aa16.96■□□□□ 0.31
CLN3-240ENST00000631023 FAM96BQ9Y3D0 163 aa16.96■□□□□ 0.31
CLN3-240ENST00000631023 C17orf98A8MV24 154 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 RBP4P02753 201 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 DLX1P56177 255 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 AESQ08117 197 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 KRBOX4Q5JUW0 171 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 TRAPPC6BQ86SZ2 158 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 LRRTM1Q86UE6 522 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 LYPD6Q86Y78 171 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 C11orf42Q8N5U0 333 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 ZDHHC22Q8N966 263 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 OR4D6Q8NGJ1 314 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 PRDM13Q9H4Q3 707 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 GHRLQ9UBU3 117 aa16.95■□□□□ 0.3
CLN3-240ENST00000631023 UBE2J1Q9Y385 318 aaPredicted RBP16.95■□□□□ 0.3
CLN3-240ENST00000631023 TRGV10A0A0A0MS01 117 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 NPFFO15130 113 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 OR7C1O76099 320 aaPredicted RBP16.94■□□□□ 0.3
CLN3-240ENST00000631023 DLX6P56179 175 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 PRB3Q04118 309 aaPredicted RBP16.94■□□□□ 0.3
CLN3-240ENST00000631023 KLRD1Q13241 179 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 MPV17LQ2QL34 196 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 UBE2UQ5VVX9 321 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 ZNF773Q6PK81 442 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 BARHL1Q9BZE3 327 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 PPIL3Q9H2H8 161 aaKnown RBP16.94■□□□□ 0.3
CLN3-240ENST00000631023 IFT22Q9H7X7 185 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 ZMAT3Q9HA38 289 aaKnown RBP16.94■□□□□ 0.3
CLN3-240ENST00000631023 ESM1Q9NQ30 184 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 TRAV24A0A0B4J272 114 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 KCNJ3P48549 501 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 FABP5Q01469 135 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 SSX1Q16384 188 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 KCTD21Q4G0X4 260 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 PIP4P2Q8N4L2 257 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 FAM216AQ8WUB2 273 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 C19orf24Q9BVV8 132 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 NDUFB11Q9NX14 153 aa16.94■□□□□ 0.3
CLN3-240ENST00000631023 MDFIC2A0A1B0GVS7 189 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 MEX3AA1L020 520 aaKnown RBP16.93■□□□□ 0.3
CLN3-240ENST00000631023 DNAJC9-AS1A6NH13 148 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 CCRL2O00421 344 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 HSPB6O14558 160 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 GEMIN2O14893 280 aaKnown RBP16.93■□□□□ 0.3
CLN3-240ENST00000631023 UBBP0CG47 229 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 GLIPR1P48060 266 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 UBA52P62987 128 aaKnown RBP16.93■□□□□ 0.3
CLN3-240ENST00000631023 ATXN7L3Q14CW9 347 aaPredicted RBP16.93■□□□□ 0.3
CLN3-240ENST00000631023 C1orf100Q5SVJ3 147 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 SLC25A28Q96A46 364 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 GAL3ST2Q9H3Q3 398 aa16.93■□□□□ 0.3
CLN3-240ENST00000631023 A0A0U1RQK1 487 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 A0A1W2PP11 408 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 A0A1W2PRD5 423 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 A0A1W2PRF3 423 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 A0A1W2PRM7 423 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 ODAMA1E959 279 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 MEIOCA2RUB1 952 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 CLDN34H7C241 214 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 FBP1P09467 338 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms