RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CNN1P51911 297 aaKnown RBP12.32□□□□□ -0.44
CPSF1-212ENST00000616140 FAM3AP98173 230 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 GGTLC2Q14390 218 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 ACSM6Q6P461 480 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 SLC36A1Q7Z2H8 476 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 TUSC5Q8IXB3 177 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 ZNF721Q8TF20 911 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 LRRC29Q8WV35 223 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 ELF5Q9UKW6 265 aaPredicted RBP12.32□□□□□ -0.44
CPSF1-212ENST00000616140 STARD10Q9Y365 291 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 MED12Q93074 2177 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 A0A1W2PPC1 479 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 C4orf51C9J302 202 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 KLK10O43240 276 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 CHRNA7P36544 502 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 DCAF12L2Q5VW00 463 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 PGLYRP3Q96LB9 341 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 ALX4Q9H161 411 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-212ENST00000616140 ZNFX1Q9P2E3 1918 aaKnown RBP12.31□□□□□ -0.44
CPSF1-212ENST00000616140 TRAV20A0A0B4J274 112 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 SPINK4O60575 86 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 CYC1P08574 325 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 IL24Q13007 206 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 GAPTQ8N292 157 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 MAFAQ8NHW3 353 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-212ENST00000616140 TMEM230Q96A57 120 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 KCNE5Q9UJ90 142 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 TRAV39A0A0B4J263 110 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 RBFOX3A6NFN3 312 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 CDIPTO14735 213 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 VSIG10L2P0DP72 767 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 COL19A1Q14993 1142 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 C3AR1Q16581 482 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 PIGYQ3MUY2 71 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 OR2M3Q8NG83 312 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 OR6S1Q8NH40 331 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 CHST5Q9GZS9 411 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 RAB33BQ9H082 229 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 CCL28Q9NRJ3 127 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 KCNK7Q9Y2U2 307 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 POMT1Q9Y6A1 747 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 A0A1W2PP11 408 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 ZNF737O75373 536 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 DXOO77932 396 aaKnown RBP12.31□□□□□ -0.44
CPSF1-212ENST00000616140 OPN1MWP04001 364 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 OPN1MW2P0DN77 364 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 OPN1MW3P0DN78 364 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 DYNLT3P51808 116 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 SMRP1Q8NCR6 262 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 IFT22Q9H7X7 185 aa12.31□□□□□ -0.44
CPSF1-212ENST00000616140 BARX1Q9HBU1 254 aaPredicted RBP12.31□□□□□ -0.44
CPSF1-212ENST00000616140 WNK2Q9Y3S1 2297 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 OR10G4Q8NGN3 311 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 OR10G9Q8NGN4 311 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 OR10G7Q8NGN6 311 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 HDHD3Q9BSH5 251 aaPredicted RBP12.3□□□□□ -0.44
CPSF1-212ENST00000616140 VSIG4Q9Y279 399 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 SF3B6Q9Y3B4 125 aaKnown RBP12.3□□□□□ -0.44
CPSF1-212ENST00000616140 THSD7AQ9UPZ6 1657 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 A0A1B0GTQ1 180 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 CDC34P49427 236 aaPredicted RBP12.3□□□□□ -0.44
CPSF1-212ENST00000616140 HLA-DRB3P79483 266 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 C10orf35Q96D05 121 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 ABCA7Q8IZY2 2146 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 NDUFB3O43676 98 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 MDH2P40926 338 aaKnown RBP12.3□□□□□ -0.44
CPSF1-212ENST00000616140 MOB3BQ86TA1 216 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 CT55Q8WUE5 264 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 TRAPPC1Q9Y5R8 145 aa12.3□□□□□ -0.44
CPSF1-212ENST00000616140 LY75O60449 1722 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 C7orf77A4D0Y5 90 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 CST2P09228 141 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 MNX1P50219 401 aaPredicted RBP12.29□□□□□ -0.44
CPSF1-212ENST00000616140 IGFBP7Q16270 282 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 NUFIP2Q7Z417 695 aaKnown RBP12.29□□□□□ -0.44
CPSF1-212ENST00000616140 M1APQ8TC57 530 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 DYRK2Q92630 601 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 TMPRSS5Q9H3S3 457 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 IGHV5-10-1A0A0J9YXX1 117 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 SERTM2A0A1B0GWG4 89 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 TRDCB7Z8K6 153 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 TOX4O94842 621 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 PNPP00491 289 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 CXCL2P19875 107 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 SPEM2Q0P670 501 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 C1orf210Q8IVY1 113 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 SLC22A18ASQ8N1D0 253 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 STPG2Q8N412 459 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 OR10AD1Q8NGE0 317 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 RSRP1Q9BUV0 290 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 IL36GQ9NZH8 169 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 TINAGQ9UJW2 476 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 KLK13Q9UKR3 277 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 R4GN57 208 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 ANKRD31Q8N7Z5 1873 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 SLC31A2O15432 143 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 KCNAB3O43448 404 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 CRYABP02511 175 aaKnown RBP12.29□□□□□ -0.44
CPSF1-212ENST00000616140 P2RY1P47900 373 aa12.29□□□□□ -0.44
CPSF1-212ENST00000616140 VMA21Q3ZAQ7 101 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms