RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SMIM7Q9BQ49 75 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 TRAPPC2LQ9UL33 140 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 A0A1W2PPQ1 181 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 MASP2O00187 686 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 EFNA2O43921 213 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 RND3P61587 244 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 GGACTQ9BVM4 153 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 CCL28Q9NRJ3 127 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 DNAJC13O75165 2243 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 TRIOBPQ9H2D6 2365 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 TGIF2-C20orf24A0A0A6YYL0 155 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 IZUMO4Q1ZYL8 232 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 TMEM252Q8N6L7 170 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 ADPRHL1Q8NDY3 354 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 OR10AD1Q8NGE0 317 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 OR10J5Q8NHC4 309 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 CPT1CQ8TCG5 803 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 NTNG2Q96CW9 530 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 LURAP1Q96LR2 239 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 FOXB1Q99853 325 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 WBP1LQ9NX94 342 aa10.97□□□□□ -0.65
LIG1-221ENST00000613670 METTL1Q9UBP6 276 aaKnown RBP10.97□□□□□ -0.65
LIG1-221ENST00000613670 NOSIPQ9Y314 301 aaKnown RBP10.97□□□□□ -0.65
LIG1-221ENST00000613670 C5orf49A4QMS7 147 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 H7BYZ3 331 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 FUT6P51993 359 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 MLF1P58340 268 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 NXPH1P58417 271 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 HLA-DRB3P79483 266 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 PMP22Q01453 160 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 ZNF880Q6PDB4 577 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 FSCN3Q9NQT6 498 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 C5orf52A6NGY3 159 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 TIAF1O95411 115 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 HEXAP06865 529 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 CCL3P10147 92 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 MMP9P14780 707 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 MPZP25189 248 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 CST9LP1Q5W188 147 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 LINC00469Q8N7U9 141 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 OR56B2PQ8NGI1 322 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 TMEM37Q8WXS4 190 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 ZNF837Q96EG3 531 aaPredicted RBP10.96□□□□□ -0.65
LIG1-221ENST00000613670 WFDC1Q9HC57 220 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 ZNF581Q9P0T4 197 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 HSF4Q9ULV5 492 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 R4GN57 208 aa10.96□□□□□ -0.65
LIG1-221ENST00000613670 KIAA1549LQ6ZVL6 1849 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 KIR2DS1A0A191URI9 304 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 SRSF10O75494 262 aaKnown RBP10.96□□□□□ -0.66
LIG1-221ENST00000613670 SYNGR4O95473 234 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 KIR2DS4P43632 304 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 HBG1P69891 147 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 HBG2P69892 147 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 CCL7P80098 99 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 TMEM187Q14656 261 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 KIR2DS1Q14954 304 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 BATFQ16520 125 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 NINJ1Q92982 152 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 MRPL13Q9BYD1 178 aaKnown RBP10.96□□□□□ -0.66
LIG1-221ENST00000613670 ERRFI1Q9UJM3 462 aaPredicted RBP10.96□□□□□ -0.66
LIG1-221ENST00000613670 STARD10Q9Y365 291 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 PCNX3Q9H6A9 2034 aa10.96□□□□□ -0.66
LIG1-221ENST00000613670 ZNF816-ZNF321PA0A0X1KG74 233 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 ANKRD30BLA7E2S9 258 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 PPP5D1E7EU14 171 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 SCGB1D1O95968 90 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 CCL20P78556 96 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 RAB35Q15286 201 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 LTC4SQ16873 150 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 WIPI1Q5MNZ9 446 aaPredicted RBP10.95□□□□□ -0.66
LIG1-221ENST00000613670 Q96M66 194 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 TP53RKQ96S44 253 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 ZNF732B4DXR9 585 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 CLDN34H7C241 214 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 BMP5P22003 454 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 GABRA4P48169 554 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 LHFPL1Q86WI0 220 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 NUDT16L1Q9BRJ7 211 aaKnown RBP10.95□□□□□ -0.66
LIG1-221ENST00000613670 AKIRIN1Q9H9L7 192 aaPredicted RBP10.95□□□□□ -0.66
LIG1-221ENST00000613670 SEC14L6B5MCN3 397 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 FOLR3P41439 243 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 RPS23P62266 143 aaKnown RBP10.95□□□□□ -0.66
LIG1-221ENST00000613670 POC1BQ8TC44 478 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 CCDC74BQ96LY2 380 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 PSENENQ9NZ42 101 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 RNF150Q9ULK6 438 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 WASF3Q9UPY6 502 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 TICRRQ7Z2Z1 1910 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 NUP210Q8TEM1 1887 aaPredicted RBP10.95□□□□□ -0.66
LIG1-221ENST00000613670 ICE1Q9Y2F5 2266 aa10.95□□□□□ -0.66
LIG1-221ENST00000613670 BTBD17A6NE02 478 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 RSG1Q9BU20 258 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 NCOR1O75376 2440 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 CHD7Q9P2D1 2997 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 BAXQ07812 192 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 MALSU1Q96EH3 234 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 LYZL4Q96KX0 146 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 DTYMKP23919 212 aa10.94□□□□□ -0.66
LIG1-221ENST00000613670 FKBP2P26885 142 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms