RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 IGLV3-32A0A0A0MS00 114 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 FAM157AC9JC47 383 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 WRBO00258 174 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 SYNGR3O43761 229 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 YIF1AO95070 293 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 P04436 131 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 COX6A1P12074 109 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 ATP6V0CP27449 155 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 ARL6IP1Q15041 203 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 C10orf128Q5T292 105 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 GAPTQ8N292 157 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 SUMF2Q8NBJ7 301 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 SPSB1Q96BD6 273 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 KLF2Q9Y5W3 355 aaPredicted RBP12.13□□□□□ -0.47
COL6A1-207ENST00000612273 EP300Q09472 2414 aaPredicted RBP12.13□□□□□ -0.47
COL6A1-207ENST00000612273 C3orf85A0A1B0GTC6 90 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 H0YL77 283 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 TERTO14746 1132 aaKnown RBP12.13□□□□□ -0.47
COL6A1-207ENST00000612273 GPR137BO60478 399 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 KLF7O75840 302 aaPredicted RBP12.13□□□□□ -0.47
COL6A1-207ENST00000612273 BCL3P20749 454 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 OTX1P32242 354 aaPredicted RBP12.13□□□□□ -0.47
COL6A1-207ENST00000612273 MRPS34P82930 218 aaKnown RBP12.13□□□□□ -0.47
COL6A1-207ENST00000612273 TBC1D26Q86UD7 250 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 OR2C3Q8N628 320 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 DMBX1Q8NFW5 382 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 EXTL1Q92935 676 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 CALHM2Q9HA72 323 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 TMEM38BQ9NVV0 291 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 FOXD3Q9UJU5 478 aaPredicted RBP12.13□□□□□ -0.47
COL6A1-207ENST00000612273 TIMM10BQ9Y5J6 103 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 IGKV1D-13A0A0B4J2D9 117 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 A0A1W2PR80 420 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 IGSF23A1L1A6 192 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 VAMP5O95183 116 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 IGLV3-1P01715 115 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 IGKV1-13P0DP09 117 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 EDN3P14138 238 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 CTSSP25774 331 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 P2RY1P47900 373 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 RAC1P63000 192 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 ZNF154Q13106 437 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 RAB35Q15286 201 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 SPINK14Q6IE38 97 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 TDHQ8IZJ6 230 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 CCL28Q9NRJ3 127 aa12.13□□□□□ -0.47
COL6A1-207ENST00000612273 C5orf49A4QMS7 147 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 ZNF724A8MTY0 619 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 PDCD6O75340 191 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 DKK1O94907 266 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 RAB5AP20339 215 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 CRYGSP22914 178 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 C3AR1Q16581 482 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 CPEB3Q8NE35 698 aaKnown RBP12.12□□□□□ -0.47
COL6A1-207ENST00000612273 MAFAQ8NHW3 353 aaPredicted RBP12.12□□□□□ -0.47
COL6A1-207ENST00000612273 SAP25Q8TEE9 199 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 TMEM171Q8WVE6 324 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 WNT5BQ9H1J7 359 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 MPPED1O15442 326 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 GAPDHP04406 335 aaKnown RBP12.12□□□□□ -0.47
COL6A1-207ENST00000612273 ALDH3B1P43353 468 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 CLDN15P56746 228 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 RNF138Q8WVD3 245 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 STARD10Q9Y365 291 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 CFAP47Q6ZTR5 3102 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 CBR3O75828 277 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 OR2C1O95371 312 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 SPATA46Q5T0L3 261 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 ZNF818PQ6ZRF7 136 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 OR2H1Q9GZK4 316 aa12.12□□□□□ -0.47
COL6A1-207ENST00000612273 RBM7Q9Y580 266 aaKnown RBP12.12□□□□□ -0.47
COL6A1-207ENST00000612273 DOCK11Q5JSL3 2073 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 NGFP01138 241 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 FUT3P21217 361 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 MDKP21741 143 aaPredicted RBP12.11□□□□□ -0.47
COL6A1-207ENST00000612273 IMMP1LQ96LU5 166 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 DUSP23Q9BVJ7 150 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 ANGPTL4Q9BY76 406 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 HES7Q9BYE0 225 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 SLC35B3Q9H1N7 401 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 CNOT4O95628 575 aaKnown RBP12.11□□□□□ -0.47
COL6A1-207ENST00000612273 PDGFBP01127 241 aaPredicted RBP12.11□□□□□ -0.47
COL6A1-207ENST00000612273 MT-ND4LP03901 98 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 DYNLT3P51808 116 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 RPS16P62249 146 aaKnown RBP12.11□□□□□ -0.47
COL6A1-207ENST00000612273 C15orf54Q8N8G6 183 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 SIT1Q9Y3P8 196 aa12.11□□□□□ -0.47
COL6A1-207ENST00000612273 CNOT1A5YKK6 2376 aaKnown RBP12.11□□□□□ -0.47
COL6A1-207ENST00000612273 TMEM50AO95807 157 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 FABP1P07148 127 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 CELA3AP09093 270 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 SEC11BP0C7V7 166 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 RBM11P57052 281 aaKnown RBP12.1□□□□□ -0.47
COL6A1-207ENST00000612273 RAC3P60763 192 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 TMEM267Q0VDI3 215 aaPredicted RBP12.1□□□□□ -0.47
COL6A1-207ENST00000612273 LHFPL2Q6ZUX7 228 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 SUCNR1Q9BXA5 334 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 DEPPQ9NTK1 212 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 MIOXQ9UGB7 285 aa12.1□□□□□ -0.47
COL6A1-207ENST00000612273 FAM166BA8MTA8 275 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms