RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 JMJD1CQ15652 2540 aa11.65□□□□□ -0.54
SHKBP1-217ENST00000598558 C2CD3Q4AC94 2353 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 RNASEK-C17orf49H0YIS7 233 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 HSPB6O14558 160 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 SLC22A1O15245 554 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 TNFAIP8O95379 198 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 VSIG8P0DPA2 414 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 OR10A3P58181 314 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 QRFPP83859 136 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 AESQ08117 197 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 TAF9Q16594 264 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 NHLRC3Q5JS37 347 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 METTL11BQ5VVY1 283 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 AWAT2Q6E213 333 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 C22orf42Q6IC83 251 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 GDPD3Q7L5L3 318 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 NR2C2APQ86WQ0 139 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 PNKDQ8N490 385 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 NKAIN3Q8N8D7 197 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 OR5D13Q8NGL4 314 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 PLPPR1Q8TBJ4 325 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 ING3Q9NXR8 418 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 GLS2Q9UI32 602 aa11.64□□□□□ -0.55
SHKBP1-217ENST00000598558 MDFIC2A0A1B0GVS7 189 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 A0A1W2PRD5 423 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 A0A1W2PRF3 423 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 A0A1W2PRM7 423 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 M0R1W7 72 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 MGST3O14880 152 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 MMP23AO75900 390 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 ARL6IP5O75915 188 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 VENTXO95231 258 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 CSTBP04080 98 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 SMIM18P0DKX4 95 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 GTF2F2P13984 249 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 BMXP51813 675 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 P2RX3P56373 397 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 PLA2G7Q13093 441 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 P2RY14Q15391 338 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 GLT8D1Q68CQ7 371 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 SIGIRRQ6IA17 410 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 C1orf122Q6ZSJ8 110 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 PIP4P2Q8N4L2 257 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 SUMF2Q8NBJ7 301 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 FAM46BQ96A09 425 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 S100A13Q99584 98 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 OCEL1Q9H607 264 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 ESM1Q9NQ30 184 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 TXNL4BQ9NX01 149 aaKnown RBP11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 WNK2Q9Y3S1 2297 aa11.63□□□□□ -0.55
SHKBP1-217ENST00000598558 A0A087WXM4 84 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 TRAV1-2A0A0B4J238 106 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 IGHV1-69DA0A0B4J2H0 117 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 SMIM30A4D0T7 59 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 C17orf98A8MV24 154 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 ZNF780AO75290 641 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 IGHV1-69P01742 117 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 MGMTP16455 207 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 PRTN3P24158 256 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 GADD45AP24522 165 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 ERP29P30040 261 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 CLDN12P56749 244 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 UNC119Q13432 240 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 ATXN7L3Q14CW9 347 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 UTF1Q5T230 341 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 BAIAP2L2Q6UXY1 529 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 C9orf139Q6ZV77 190 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 RTN4RL2Q86UN3 420 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 TEX29Q8N6K0 151 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 SIGLECL1Q8N7X8 197 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 CHST4Q8NCG5 386 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 FOXRED1Q96CU9 486 aaPredicted RBP11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 Q96M66 194 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 SELENOIQ9C0D9 397 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 SLITRK2Q9H156 845 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 IFT22Q9H7X7 185 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 UNKLQ9H9P5 680 aaKnown RBP11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 STUB1Q9UNE7 303 aa11.62□□□□□ -0.55
SHKBP1-217ENST00000598558 A0A0A6YYD4 124 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 TRAV39A0A0B4J263 110 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 TMEM14DPA8MWL7 114 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 SLC17A2O00624 439 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 CRTAPO75718 401 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 OR7C1O76099 320 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 CSN2P05814 226 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 ZNF728P0DKX0 622 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 CGB3P0DN86 165 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 CGB7P0DN87 165 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 CD36P16671 472 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 JUNBP17275 347 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 GALP22466 123 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 HTR2CP28335 458 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 FGF9P31371 208 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 GDNFP39905 211 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 MEF2CQ06413 473 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 GPR176Q14439 515 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 DEFB112Q30KQ8 113 aa11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 PAN3Q58A45 887 aaKnown RBP11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 RSBN1Q5VWQ0 802 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-217ENST00000598558 CMTM4Q8IZR5 234 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms