RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TGIF2LYQ8IUE0 185 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 TOMM5Q8N4H5 51 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 ASCC1Q8N9N2 400 aaKnown RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 DEFB108BQ8NET1 73 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 OR5T2Q8NGG2 359 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 ANGPTL6Q8NI99 470 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 TRIM63Q969Q1 353 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 MARVELD3Q96A59 401 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 CHST6Q9GZX3 395 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 DNTTIP1Q9H147 329 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 RIMS4Q9H426 269 aaPredicted RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 CHMP1AQ9HD42 196 aaPredicted RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 C12orf4Q9NQ89 552 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 DCAF16Q9NXF7 216 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 ETAA1Q9NY74 926 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 MTFP1Q9UDX5 166 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 EDARQ9UNE0 448 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 KCNK7Q9Y2U2 307 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 RBMX2Q9Y388 322 aaKnown RBP12.95□□□□□ -0.34
UPF1-206ENST00000598471 CACNA1DQ01668 2161 aa12.95□□□□□ -0.34
UPF1-206ENST00000598471 DYSFO75923 2080 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 IGKV1D-17A0A075B6S4 117 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 NDUFA2O43678 99 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 RP2O75695 350 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 ZNF205O95201 554 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 FSTL3O95633 263 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 DTYMKP23919 212 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 COL8A2P25067 703 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 BTG1P62324 171 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 HOXA4Q00056 320 aaPredicted RBP12.94□□□□□ -0.34
UPF1-206ENST00000598471 OLFML2AQ68BL7 652 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 BRICD5Q6PL45 260 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 RTN4RL2Q86UN3 420 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 ZNF561Q8N587 486 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 CD177Q8N6Q3 437 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 IGFBPL1Q8WX77 278 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 RAB1CQ92928 201 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 SNX22Q96L94 193 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 PPA2Q9H2U2 334 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 ZNF665Q9H7R5 613 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 CHODLQ9H9P2 273 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 BARX1Q9HBU1 254 aaPredicted RBP12.94□□□□□ -0.34
UPF1-206ENST00000598471 ZNF107Q9UII5 783 aaPredicted RBP12.94□□□□□ -0.34
UPF1-206ENST00000598471 ZNF222Q9UK12 451 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 ELF5Q9UKW6 265 aaPredicted RBP12.94□□□□□ -0.34
UPF1-206ENST00000598471 UTP20O75691 2785 aaKnown RBP12.94□□□□□ -0.34
UPF1-206ENST00000598471 TANC2Q9HCD6 1990 aa12.94□□□□□ -0.34
UPF1-206ENST00000598471 MEIS3P1A6NDR6 274 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 ORC5O43913 435 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 SSX5O60225 188 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 GYPAP02724 150 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 STEAP3Q658P3 488 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 SLC36A1Q7Z2H8 476 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 LYSMD2Q8IV50 215 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 MUC20Q8N307 709 aaPredicted RBP12.93□□□□□ -0.34
UPF1-206ENST00000598471 BPIFB2Q8N4F0 458 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 SETD6Q8TBK2 473 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 SDSLQ96GA7 329 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 MED30Q96HR3 178 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 COX4I2Q96KJ9 171 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 OCSTAMPQ9BR26 566 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 ZNF701Q9NV72 531 aaPredicted RBP12.93□□□□□ -0.34
UPF1-206ENST00000598471 KLK11Q9UBX7 282 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 NBPF19A0A087WUL8 3843 aa12.93□□□□□ -0.34
UPF1-206ENST00000598471 POM121CA8CG34 1229 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 CENPXA8MT69 81 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 LYNX1G3V0Z9 82 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 LANCL1O43813 399 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 LYNX1P0DP58 116 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 FAUP35544 74 aaKnown RBP12.92□□□□□ -0.34
UPF1-206ENST00000598471 TMEM33P57088 247 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 TAS2R19P59542 299 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 IL13RA1P78552 427 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 CARTPTQ16568 116 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 ATPAF1Q5TC12 328 aaPredicted RBP12.92□□□□□ -0.34
UPF1-206ENST00000598471 ZNF788Q6ZQV5 615 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 OR5D13Q8NGL4 314 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 DEDD2Q8WXF8 326 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 C7orf50Q9BRJ6 194 aaKnown RBP12.92□□□□□ -0.34
UPF1-206ENST00000598471 FAM234AQ9H0X4 552 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 HECTD1Q9ULT8 2610 aa12.92□□□□□ -0.34
UPF1-206ENST00000598471 DSCAMO60469 2012 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 TMEM82A0PJX8 343 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 ANKRD20A5PA0PJZ0 165 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 TMEM30CPA0ZSE6 113 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 FUOMA2VDF0 154 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 MGST3O14880 152 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 SIGLEC5O15389 551 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 PPIHO43447 177 aaKnown RBP12.91□□□□□ -0.34
UPF1-206ENST00000598471 PSPNO60542 156 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 ZNF737O75373 536 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 LY6HO94772 140 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 IGHV2-70P01814 119 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 CSN2P05814 226 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 FCGR3AP08637 254 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 AMY2BP19961 511 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 RBMXP38159 391 aaKnown RBP12.91□□□□□ -0.34
UPF1-206ENST00000598471 OR3A1P47881 315 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 IFITM3Q01628 133 aa12.91□□□□□ -0.34
UPF1-206ENST00000598471 DYRK1AQ13627 763 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms