RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZDHHC16Q969W1 377 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 COQ2Q96H96 371 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 ZNF714Q96N38 554 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 IFT22Q9H7X7 185 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 ISYNA1Q9NPH2 558 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 CKLFQ9UBR5 152 aa13.15□□□□□ -0.3
TRIM28-213ENST00000598355 SF3B6Q9Y3B4 125 aaKnown RBP13.15□□□□□ -0.3
TRIM28-213ENST00000598355 ODF3BA8MYP8 253 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 IGHV1-8P0DP01 117 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 ZNF44P15621 663 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 TGFBR2P37173 567 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 RBM11P57052 281 aaKnown RBP13.14□□□□□ -0.31
TRIM28-213ENST00000598355 RPL15P61313 204 aaKnown RBP13.14□□□□□ -0.31
TRIM28-213ENST00000598355 TBCEQ15813 527 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-213ENST00000598355 C16orf87Q6PH81 154 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 SATL1Q86VE3 508 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 TPRX1Q8N7U7 411 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 NKAIN3Q8N8D7 197 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 CORO2AQ92828 525 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 CNBD2Q96M20 576 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 CHIAQ9BZP6 476 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 FAM192AQ9GZU8 254 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 PPA2Q9H2U2 334 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 HEXA-AS1Q9H8Q6 139 aa13.14□□□□□ -0.31
TRIM28-213ENST00000598355 UBE2J1Q9Y385 318 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-213ENST00000598355 TRAV24A0A0B4J272 114 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 CDRT1O95170 752 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 IGHV4-59P01825 116 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 TPBGQ13641 420 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 INSL4Q14641 139 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 RSU1Q15404 277 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 MED22Q15528 200 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 PIGYQ3MUY2 71 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 ZNF626Q68DY1 528 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 BEND2Q8NDZ0 799 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 OR10K1Q8NGX5 313 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 NCOR1P1Q9H4R4 102 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 BLOC1S6Q9UL45 172 aa13.13□□□□□ -0.31
TRIM28-213ENST00000598355 A0A1W2PPK0 400 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 MEIOCA2RUB1 952 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 FUOMA2VDF0 154 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 FAM90A8PA6NJQ4 464 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 ZNF780AO75290 641 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-213ENST00000598355 CLPXO76031 633 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 CD37P11049 281 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 MLLT11Q13015 90 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-213ENST00000598355 AWAT1Q58HT5 328 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 ZNF782Q6ZMW2 699 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-213ENST00000598355 LINC00596Q86U02 117 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 OR11H6Q8NGC7 330 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 C17orf50Q8WW18 174 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 PHYHIPQ92561 330 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 GCDHQ92947 438 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-213ENST00000598355 METTL9Q9H1A3 318 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 MEGF9Q9H1U4 602 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 TAS2R3Q9NYW6 316 aa13.12□□□□□ -0.31
TRIM28-213ENST00000598355 A0A1W2PRD5 423 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 A0A1W2PRF3 423 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 A0A1W2PRM7 423 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 ODAMA1E959 279 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 MEX3AA1L020 520 aaKnown RBP13.11□□□□□ -0.31
TRIM28-213ENST00000598355 DEGS1O15121 323 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 DENRO43583 198 aaKnown RBP13.11□□□□□ -0.31
TRIM28-213ENST00000598355 UCHL1P09936 223 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 CGB3P0DN86 165 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 CGB7P0DN87 165 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 CPEP16870 476 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 GLIPR1P48060 266 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 KCNJ3P48549 501 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 GABARAPL2P60520 117 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 AESQ08117 197 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 FOXL1Q12952 345 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 TAF9Q16594 264 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 AANATQ16613 207 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 MPV17LQ2QL34 196 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 ACSM3Q53FZ2 586 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 FAM27D1Q5T7N8 215 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 LIPKQ5VXJ0 399 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 OSR2Q8N2R0 312 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 OR4D6Q8NGJ1 314 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 DYRK2Q92630 601 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 UFD1Q92890 307 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 UQCC2Q9BRT2 126 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 ZNF581Q9P0T4 197 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 ST3GAL6Q9Y274 331 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 FAM96BQ9Y3D0 163 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 SESN1Q9Y6P5 492 aa13.11□□□□□ -0.31
TRIM28-213ENST00000598355 TRGV10A0A0A0MS01 117 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 A0A1W2PP11 408 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 FAM181BA6NEQ2 426 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 MRPS14O60783 128 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 HTR3BO95264 441 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 MAS1P04201 325 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 SERPINA2P20848 420 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 GPR176Q14439 515 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 ATXN7L3Q14CW9 347 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 PAN3Q58A45 887 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 LDLRAD2Q5SZI1 272 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 RSBN1Q5VWQ0 802 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 HEPN1Q6WQI6 88 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms