RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 IL36GQ9NZH8 169 aa11.33□□□□□ -0.6
UPF1-205ENST00000598209 hADV38S2A0JD32 116 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 C17orf98A8MV24 154 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 CLDN34H7C241 214 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 HOXA3O43365 443 aaPredicted RBP11.32□□□□□ -0.6
UPF1-205ENST00000598209 DENRO43583 198 aaKnown RBP11.32□□□□□ -0.6
UPF1-205ENST00000598209 CSTBP04080 98 aaKnown RBP11.32□□□□□ -0.6
UPF1-205ENST00000598209 MELTFP08582 738 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 ZNF728P0DKX0 622 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 SERPINA2P20848 420 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 ERP29P30040 261 aaKnown RBP11.32□□□□□ -0.6
UPF1-205ENST00000598209 P2RX3P56373 397 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 ERVFRD-1P60508 538 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 ACTG1P63261 375 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 MLLT11Q13015 90 aaPredicted RBP11.32□□□□□ -0.6
UPF1-205ENST00000598209 TPBGQ13641 420 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 PIGYQ3MUY2 71 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 FAM27D1Q5T7N8 215 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 CDH26Q8IXH8 852 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 MUL1Q969V5 352 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 SLC25A28Q96A46 364 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 ZNF714Q96N38 554 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 HEXA-AS1Q9H8Q6 139 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 MRPS28Q9Y2Q9 187 aaKnown RBP11.32□□□□□ -0.6
UPF1-205ENST00000598209 SF3B6Q9Y3B4 125 aaKnown RBP11.32□□□□□ -0.6
UPF1-205ENST00000598209 FAM96BQ9Y3D0 163 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 LINC00312Q9Y6C7 94 aa11.32□□□□□ -0.6
UPF1-205ENST00000598209 MEIOCA2RUB1 952 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 FUOMA2VDF0 154 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 RBP4P02753 201 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 CSN2P05814 226 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 RNASE1P07998 156 aaKnown RBP11.31□□□□□ -0.6
UPF1-205ENST00000598209 CPEP16870 476 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 SAA4P35542 130 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 GP2P55259 537 aaKnown RBP11.31□□□□□ -0.6
UPF1-205ENST00000598209 GABARAPL2P60520 117 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 RPS25P62851 125 aaKnown RBP11.31□□□□□ -0.6
UPF1-205ENST00000598209 AESQ08117 197 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 TBCEQ15813 527 aaPredicted RBP11.31□□□□□ -0.6
UPF1-205ENST00000598209 SLC22A6Q4U2R8 563 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 ZNF782Q6ZMW2 699 aaPredicted RBP11.31□□□□□ -0.6
UPF1-205ENST00000598209 CEACAM19Q7Z692 300 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 OSR2Q8N2R0 312 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 NKAIN3Q8N8D7 197 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 TMEM203Q969S6 136 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 MGLLQ99685 303 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 TCF7L1Q9HCS4 588 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 PCDHB16Q9NRJ7 776 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 TNFRSF19Q9NS68 423 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 ST3GAL6Q9Y274 331 aa11.31□□□□□ -0.6
UPF1-205ENST00000598209 TRAV24A0A0B4J272 114 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 MEGF11A6BM72 1044 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 HSPB6O14558 160 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 ZNF780AO75290 641 aaPredicted RBP11.3□□□□□ -0.6
UPF1-205ENST00000598209 SC5DO75845 299 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 FBP1P09467 338 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 COX7A1P24310 79 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 GLIPR1P48060 266 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 RBM11P57052 281 aaKnown RBP11.3□□□□□ -0.6
UPF1-205ENST00000598209 GPR176Q14439 515 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 ATXN7L3Q14CW9 347 aaPredicted RBP11.3□□□□□ -0.6
UPF1-205ENST00000598209 HSD17B12Q53GQ0 312 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 PAN3Q58A45 887 aaKnown RBP11.3□□□□□ -0.6
UPF1-205ENST00000598209 NHLRC3Q5JS37 347 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 KRBOX4Q5JUW0 171 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 AWAT2Q6E213 333 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 GLIPR1L1Q6UWM5 242 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 ZNF367Q7RTV3 350 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 TRAPPC6BQ86SZ2 158 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 LYPD6Q86Y78 171 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 LDLRAD3Q86YD5 345 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 OR4D6Q8NGJ1 314 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 GCDHQ92947 438 aaPredicted RBP11.3□□□□□ -0.6
UPF1-205ENST00000598209 COQ2Q96H96 371 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 ACOT13Q9NPJ3 140 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 ING3Q9NXR8 418 aa11.3□□□□□ -0.6
UPF1-205ENST00000598209 UBE2J1Q9Y385 318 aaPredicted RBP11.3□□□□□ -0.6
UPF1-205ENST00000598209 TRGV10A0A0A0MS01 117 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 A0A1W2PP11 408 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 ODAMA1E959 279 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 TMEM89A2RUT3 159 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 MRPS14O60783 128 aaKnown RBP11.29□□□□□ -0.6
UPF1-205ENST00000598209 PAHP00439 452 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 UCHL1P09936 223 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 IGHV1-8P0DP01 117 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 GTF2F2P13984 249 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 TRAM1Q15629 374 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 MIDNQ504T8 468 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 C16orf87Q6PH81 154 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 TMEM91Q6ZNR0 172 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 LINC00596Q86U02 117 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 LRRTM1Q86UE6 522 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 TMEM86BQ8N661 226 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 SSMEM1Q8WWF3 244 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 PHYHIPQ92561 330 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 UQCC2Q9BRT2 126 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 PPIL3Q9H2H8 161 aaKnown RBP11.29□□□□□ -0.6
UPF1-205ENST00000598209 ZNF581Q9P0T4 197 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 ZNRD1Q9P1U0 126 aa11.29□□□□□ -0.6
UPF1-205ENST00000598209 POMT1Q9Y6A1 747 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms