RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 FAM90A1Q86YD7 464 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 TMEM229BQ8NBD8 167 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 LRRC29Q8WV35 223 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 NUDCD2Q8WVJ2 157 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 FBXW5Q969U6 566 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 SULT4A1Q9BR01 284 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 FAAP24Q9BTP7 215 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 SEBOXQ9HB31 216 aaPredicted RBP11.33□□□□□ -0.6
VMP1-217ENST00000593168 GCM1Q9NP62 436 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 DYNLRB1Q9NP97 96 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 ZNF581Q9P0T4 197 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 IL36RNQ9UBH0 155 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 GLS2Q9UI32 602 aa11.33□□□□□ -0.6
VMP1-217ENST00000593168 CHD3Q12873 2000 aaKnown RBP11.32□□□□□ -0.6
VMP1-217ENST00000593168 SH2D1BO14796 132 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 DEGS1O15121 323 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 DUSP1P28562 367 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 FAUP35544 74 aaKnown RBP11.32□□□□□ -0.6
VMP1-217ENST00000593168 SNRPD2P62316 118 aaKnown RBP11.32□□□□□ -0.6
VMP1-217ENST00000593168 RBM39Q14498 530 aaKnown RBP11.32□□□□□ -0.6
VMP1-217ENST00000593168 DEFB113Q30KQ7 82 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 SMIM21Q3B7S5 101 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 NRARPQ7Z6K4 114 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 DUSP18Q8NEJ0 188 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 OR11L1Q8NGX0 322 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 C18orf12Q96KH6 178 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 MDFIQ99750 246 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 CMSS1Q9BQ75 279 aaKnown RBP11.32□□□□□ -0.6
VMP1-217ENST00000593168 CHST6Q9GZX3 395 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 HRASLSQ9HDD0 168 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 DECR2Q9NUI1 292 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 FAIMQ9NVQ4 179 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 RNF7Q9UBF6 113 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 AK3Q9UIJ7 227 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 EDARQ9UNE0 448 aa11.32□□□□□ -0.6
VMP1-217ENST00000593168 TRAV24A0A0B4J272 114 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 FAM240BA0A1B0GVZ2 78 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 MEIS3P1A6NDR6 274 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 MCRIP1C9JLW8 97 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 IFNL4K9M1U5 179 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 HS3ST1O14792 307 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 CD74P04233 296 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 AKAIN1P0CW23 69 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 DTYMKP23919 212 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 LMO1P25800 156 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 SLC6A1P30531 599 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 PPOXP50336 477 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 CCL8P80075 99 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 MRPS15P82914 257 aaKnown RBP11.31□□□□□ -0.6
VMP1-217ENST00000593168 AGAP6Q5VW22 663 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 SHEQ5VZ18 495 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 CCBE1Q6UXH8 406 aaPredicted RBP11.31□□□□□ -0.6
VMP1-217ENST00000593168 HOGA1Q86XE5 327 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 PRIMA1Q86XR5 153 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 KRTAP1-3Q8IUG1 177 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 ZCCHC24Q8N2G6 241 aaKnown RBP11.31□□□□□ -0.6
VMP1-217ENST00000593168 GCSAMQ8N6F7 178 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 ENKURQ8TC29 256 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 HPS1Q92902 700 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 WDR13Q9H1Z4 485 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 OCEL1Q9H607 264 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 IFT46Q9NQC8 304 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 CBLN4Q9NTU7 201 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 PPP1R3CQ9UQK1 317 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 NPTNQ9Y639 398 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 ARFGEF3Q5TH69 2177 aa11.31□□□□□ -0.6
VMP1-217ENST00000593168 FN1P02751 2386 aaKnown RBP11.31□□□□□ -0.6
VMP1-217ENST00000593168 POM121CA8CG34 1229 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 KIAA1324LA8MWY0 1029 aaPredicted RBP11.3□□□□□ -0.6
VMP1-217ENST00000593168 ZNF736B4DX44 427 aaPredicted RBP11.3□□□□□ -0.6
VMP1-217ENST00000593168 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.3□□□□□ -0.6
VMP1-217ENST00000593168 WNT9BO14905 357 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 OR2H2O95918 312 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 HAND1O96004 215 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 DANCRP0C864 163 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 IRF2P14316 349 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 ZNF44P15621 663 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 EGR1P18146 543 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 TBPP20226 339 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 SRSF7Q16629 238 aaKnown RBP eCLIP11.3□□□□□ -0.6
VMP1-217ENST00000593168 STEAP1BQ6NZ63 245 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 BRICD5Q6PL45 260 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 CLEC9AQ6UXN8 241 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 GVQW1Q8N7I0 195 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 SUMF2Q8NBJ7 301 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 CYYR1Q96J86 154 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 DPCDQ9BVM2 203 aaPredicted RBP11.3□□□□□ -0.6
VMP1-217ENST00000593168 RIMS4Q9H426 269 aaPredicted RBP11.3□□□□□ -0.6
VMP1-217ENST00000593168 SAP30LQ9HAJ7 183 aa11.3□□□□□ -0.6
VMP1-217ENST00000593168 UBE2QL1A1L167 161 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 LRRC30A6NM36 301 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 C3orf80F5H4A9 247 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 SLC33A1O00400 549 aaPredicted RBP11.29□□□□□ -0.6
VMP1-217ENST00000593168 SSX4O60224 188 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 CD3DP04234 171 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 SPNP16150 400 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 BTCP35070 178 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 GMFBP60983 142 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 MEF2DQ14814 521 aa11.29□□□□□ -0.6
VMP1-217ENST00000593168 PLA1AQ53H76 456 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms