RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LPCAT4Q643R3 524 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 ABHD12Q8N2K0 398 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 OR4P4Q8NGL7 312 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 TSEN15Q8WW01 171 aaKnown RBP16.45■□□□□ 0.22
SHMT1-209ENST00000582653 MYCBPQ99417 103 aaPredicted RBP16.45■□□□□ 0.22
SHMT1-209ENST00000582653 INPP5EQ9NRR6 644 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 MRPS18AQ9NVS2 196 aaKnown RBP16.45■□□□□ 0.22
SHMT1-209ENST00000582653 RPL36Q9Y3U8 105 aaKnown RBP16.45■□□□□ 0.22
SHMT1-209ENST00000582653 PCDHGB5Q9Y5G0 923 aa16.45■□□□□ 0.22
SHMT1-209ENST00000582653 F2RL2O00254 374 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 SLC33A1O00400 549 aaPredicted RBP16.44■□□□□ 0.22
SHMT1-209ENST00000582653 DEGS1O15121 323 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 LIMS3P0CW19 117 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 LIMS4P0CW20 117 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 SOX2P48431 317 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 BLCAPP62952 87 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 KLHL22Q53GT1 634 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 ZNF691Q5VV52 312 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 XAF1Q6GPH4 301 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 WIPF2Q8TF74 440 aaPredicted RBP16.44■□□□□ 0.22
SHMT1-209ENST00000582653 CORO2AQ92828 525 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 COQ2Q96H96 371 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 OR5M11Q96RB7 305 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 NR1H4Q96RI1 486 aaPredicted RBP16.44■□□□□ 0.22
SHMT1-209ENST00000582653 WNT10AQ9GZT5 417 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 GAL3ST2Q9H3Q3 398 aa16.44■□□□□ 0.22
SHMT1-209ENST00000582653 FUOMA2VDF0 154 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 FAM90A22PA8MWA6 464 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 H3BUI4 141 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 EBAG9O00559 213 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 FBXO24O75426 580 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 WBP4O75554 376 aaKnown RBP16.43■□□□□ 0.22
SHMT1-209ENST00000582653 ALX3O95076 343 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 CCDC159P0C7I6 412 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 CD28P10747 220 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 CD24P25063 80 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 HTR1DP28221 377 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 MRPL28Q13084 256 aaKnown RBP16.43■□□□□ 0.22
SHMT1-209ENST00000582653 ATXN7L3Q14CW9 347 aaPredicted RBP16.43■□□□□ 0.22
SHMT1-209ENST00000582653 FBLN7Q53RD9 439 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 KRBOX4Q5JUW0 171 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 HEPN1Q6WQI6 88 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 OR51A2Q8NGJ7 313 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 RGP1Q92546 391 aaPredicted RBP16.43■□□□□ 0.22
SHMT1-209ENST00000582653 PPIL3Q9H2H8 161 aaKnown RBP16.43■□□□□ 0.22
SHMT1-209ENST00000582653 RHOFQ9HBH0 211 aa16.43■□□□□ 0.22
SHMT1-209ENST00000582653 ODAMA1E959 279 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 HSPB6O14558 160 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 ETV1P50549 477 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 ZSCAN26Q16670 478 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 NSUN5P1Q3KNT7 163 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 UTF1Q5T230 341 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 OR52W1Q6IF63 320 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 SATL1Q86VE3 508 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 NDUFA11Q86Y39 141 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 ZNF286AQ9HBT8 521 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 FGF20Q9NP95 211 aaPredicted RBP16.42■□□□□ 0.22
SHMT1-209ENST00000582653 TAS2R3Q9NYW6 316 aa16.42■□□□□ 0.22
SHMT1-209ENST00000582653 GABRPO00591 440 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 PEX14O75381 377 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 CLIC3O95833 236 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 CSN2P05814 226 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 RAB3AP20336 220 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 OR2G6Q5TZ20 316 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 CHST4Q8NCG5 386 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 ZNF555Q8NEP9 628 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 OR10K1Q8NGX5 313 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 GPER1Q99527 375 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 SMPD3Q9NY59 655 aaPredicted RBP16.41■□□□□ 0.22
SHMT1-209ENST00000582653 TAS2R4Q9NYW5 299 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 DPM3Q9P2X0 92 aa16.41■□□□□ 0.22
SHMT1-209ENST00000582653 PLXNB1O43157 2135 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 H0YJX3 145 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 XPNPEP2O43895 674 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 IGLV1-47P01700 117 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 RPSAP08865 295 aaKnown RBP16.4■□□□□ 0.22
SHMT1-209ENST00000582653 PTGFRP43088 359 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 MTNR1BP49286 362 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 BDH1Q02338 343 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 C17orf58Q2M2W7 97 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 TMEM95Q3KNT9 176 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 ARSJQ5FYB0 599 aaPredicted RBP16.4■□□□□ 0.22
SHMT1-209ENST00000582653 ZNF529Q6P280 563 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 RTN4RL2Q86UN3 420 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 CNIH3Q8TBE1 160 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 ZNF596Q8TC21 504 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 TNFAIP8L1Q8WVP5 186 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 CITED2Q99967 270 aaPredicted RBP16.4■□□□□ 0.22
SHMT1-209ENST00000582653 OCSTAMPQ9BR26 566 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 JAM3Q9BX67 310 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 MMP28Q9H239 520 aa16.4■□□□□ 0.22
SHMT1-209ENST00000582653 SIRT4Q9Y6E7 314 aaPredicted RBP16.4■□□□□ 0.22
SHMT1-209ENST00000582653 ADARB2-AS1A8MUL3 147 aa16.39■□□□□ 0.21
SHMT1-209ENST00000582653 MAGEB3O15480 346 aa16.39■□□□□ 0.21
SHMT1-209ENST00000582653 LRRC36Q1X8D7 754 aa16.39■□□□□ 0.21
SHMT1-209ENST00000582653 ELP2Q6IA86 826 aa16.39■□□□□ 0.21
SHMT1-209ENST00000582653 REC114Q7Z4M0 266 aa16.39■□□□□ 0.21
SHMT1-209ENST00000582653 PXT1Q8NFP0 134 aa16.39■□□□□ 0.21
SHMT1-209ENST00000582653 OR4F17Q8NGA8 305 aa16.39■□□□□ 0.21
SHMT1-209ENST00000582653 OR4D6Q8NGJ1 314 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms