RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 OR4S1Q8NGB4 309 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 PLPPR1Q8TBJ4 325 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 MTFP1Q9UDX5 166 aa21■□□□□ 0.95
SHMT1-207ENST00000580002 C17orf107Q6ZR85 190 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 LINC00596Q86U02 117 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 FGFRL1Q8N441 504 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 HPS1Q92902 700 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 CCL13Q99616 98 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 IFT22Q9H7X7 185 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 RABL2AQ9UBK7 228 aaPredicted RBP20.99■□□□□ 0.95
SHMT1-207ENST00000580002 RABL2BQ9UNT1 228 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 MAB21L2Q9Y586 359 aa20.99■□□□□ 0.95
SHMT1-207ENST00000580002 OOEPA6NGQ2 149 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 LPLP06858 475 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 DAOP14920 347 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 PNLIPRP3Q17RR3 467 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 HFEQ30201 348 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 PAN3Q58A45 887 aaKnown RBP20.98■□□□□ 0.95
SHMT1-207ENST00000580002 TEX36Q5VZQ5 186 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 ZNF57Q68EA5 555 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-207ENST00000580002 STUMQ69YW2 141 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 OR52W1Q6IF63 320 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 C20orf204Q6ZNR8 217 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 ZNRF1Q8ND25 227 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 POM121Q96HA1 1249 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 TANC2Q9HCD6 1990 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 PTPN13Q12923 2485 aa20.98■□□□□ 0.95
SHMT1-207ENST00000580002 PPIAL4EA0A075B759 164 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 IGKV1D-8A0A087WSZ0 117 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 TRAV39A0A0B4J263 110 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 SERPINE3A8MV23 424 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 MCRIP1C9JLW8 97 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 PPIAL4DF5H284 164 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 SSX4O60224 188 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 PPIAL4FP0DN26 164 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 ATXN7L3Q14CW9 347 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-207ENST00000580002 ZMYND11Q15326 602 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 MICBQ29980 383 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 ZNF787Q6DD87 383 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 FIP1L1Q6UN15 594 aaKnown RBP20.97■□□□□ 0.95
SHMT1-207ENST00000580002 NEK7Q8TDX7 302 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 C15orf40Q8WUR7 153 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 NEU4Q8WWR8 484 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-207ENST00000580002 CMSS1Q9BQ75 279 aaKnown RBP20.97■□□□□ 0.95
SHMT1-207ENST00000580002 ST6GALNAC5Q9BVH7 336 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 SHARPINQ9H0F6 387 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 PPIAL4AQ9Y536 164 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 CSMD2Q7Z408 3487 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 RBBP9O75884 186 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 LMO1P25800 156 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 MRPS10P82664 201 aaKnown RBP20.97■□□□□ 0.95
SHMT1-207ENST00000580002 FAAP20Q6NZ36 180 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 LYPD2Q6UXB3 125 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 CCL19Q99731 98 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 TMEM165Q9HC07 324 aa20.97■□□□□ 0.95
SHMT1-207ENST00000580002 LGALS8O00214 317 aa20.96■□□□□ 0.95
SHMT1-207ENST00000580002 KLF9Q13886 244 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-207ENST00000580002 AVPI1Q5T686 147 aa20.96■□□□□ 0.95
SHMT1-207ENST00000580002 SCPEP1Q9HB40 452 aa20.96■□□□□ 0.95
SHMT1-207ENST00000580002 POLQO75417 2590 aa20.96■□□□□ 0.95
SHMT1-207ENST00000580002 MEX3AA1L020 520 aaKnown RBP20.95■□□□□ 0.94
SHMT1-207ENST00000580002 SULT1C2O00338 296 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 ZNF737O75373 536 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 FCN3O75636 299 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 OR3A1P47881 315 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 C1orf87Q8N0U7 546 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 FAM216BQ8N7L0 139 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 TPRX1Q8N7U7 411 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 ASCC1Q8N9N2 400 aaKnown RBP20.95■□□□□ 0.94
SHMT1-207ENST00000580002 OR4D10Q8NGI6 311 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 SNAPC3Q92966 411 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 GAFA1Q96PS6 74 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 ETAA1Q9NY74 926 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 F12P00748 615 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-207ENST00000580002 HLA-DMAP28067 261 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 OR4K15Q8NH41 348 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 C11orf54Q9H0W9 315 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-207ENST00000580002 PALMDQ9NP74 551 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 GLS2Q9UI32 602 aa20.95■□□□□ 0.94
SHMT1-207ENST00000580002 FBXO9Q9UK97 447 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-207ENST00000580002 IFNL4K9M1U5 179 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 TNFRSF13BO14836 293 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-207ENST00000580002 MUC1P15941 1255 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-207ENST00000580002 AESQ08117 197 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 CARTPTQ16568 116 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 TOMM5Q8N4H5 51 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 POC5Q8NA72 575 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 MARVELD3Q96A59 401 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 C14orf79Q96F83 325 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 OCSTAMPQ9BR26 566 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 SPACA1Q9HBV2 294 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 ZNF701Q9NV72 531 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-207ENST00000580002 PLEKHA6Q9Y2H5 1048 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 ABCA12Q86UK0 2595 aa20.94■□□□□ 0.94
SHMT1-207ENST00000580002 ANKRD20A5PA0PJZ0 165 aa20.93■□□□□ 0.94
SHMT1-207ENST00000580002 IGHV4-39P01824 125 aa20.93■□□□□ 0.94
SHMT1-207ENST00000580002 CD3DP04234 171 aa20.93■□□□□ 0.94
SHMT1-207ENST00000580002 FCGR3AP08637 254 aa20.93■□□□□ 0.94
SHMT1-207ENST00000580002 INPP1P49441 399 aa20.93■□□□□ 0.94
SHMT1-207ENST00000580002 CCDC107Q8WV48 283 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms