RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 HAND1O96004 215 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 MT-CO2P00403 227 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 C1QCP02747 245 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 MT-ND4P03905 459 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 IGKV3-11P04433 115 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 BPGMP07738 259 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ALOX5APP20292 161 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 COX5AP20674 150 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 IFNGR2P38484 337 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 RFC3P40938 356 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 TNFSF9P41273 254 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 LGALS7P47929 136 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CX3CR1P49238 355 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 LHX2P50458 406 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CDKN2DP55273 166 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CLDN12P56749 244 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 TAS2R41P59536 307 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 SELENOTP62341 195 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 DYNLL1P63167 89 aaKnown RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 TSNQ15631 228 aaKnown RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 ATP6V1FQ16864 119 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 PYCR3Q53H96 274 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 SPIN4Q56A73 249 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ACTL10Q5JWF8 245 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 FAM71E1Q6IPT2 247 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 HAGHLQ6PII5 290 aaPredicted RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 TMEM205Q6UW68 189 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CASP12Q6UXS9 341 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ACP7Q6ZNF0 438 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 C19orf35Q6ZS72 473 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 NIT1Q86X76 327 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 FTMTQ8N4E7 242 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ZNF283Q8N7M2 679 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 MDS2Q8NDY4 140 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 VN1R2Q8NFZ6 395 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 OR4F6Q8NGB9 312 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 OR9Q1Q8NGQ5 310 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 OR1P1Q8NH06 330 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 SFT2D1Q8WV19 159 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 APH1AQ96BI3 265 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ZHX1-C8orf76Q96EF9 292 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 PYURFQ96I23 114 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ITCHQ96J02 903 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 MS4A8Q9BY19 250 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 RAB34Q9BZG1 259 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ARL6Q9H0F7 186 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CLMPQ9H6B4 373 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 PATZ1Q9HBE1 687 aaKnown RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 HMG20AQ9NP66 347 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 SPANXA1Q9NS26 97 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 YARS2Q9Y2Z4 477 aaKnown RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 WSB1Q9Y6I7 421 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CARMIL3Q8ND23 1372 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 PZPP20742 1482 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CDK12Q9NYV4 1490 aaPredicted RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 COL4A4P53420 1690 aaPredicted RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 CD109Q6YHK3 1445 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 CROCC2H7BZ55 1655 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 MAGI2Q86UL8 1455 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 NSG1A0A0A6YYJ2 146 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 LRP5LA4QPB2 252 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 LINC00862A6NCI5 91 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 C5orf58C9J3I9 102 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 RGS16O15492 202 aaPredicted RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 CYB5BO43169 146 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 PDYNP01213 254 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 C1QBP02746 253 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 MMP1P03956 469 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 P04436 131 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 CTSLP07711 333 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 RHOCP08134 193 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 TACSTD2P09758 323 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 CD37P11049 281 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 LOXP28300 417 aaPredicted RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 S100A11P31949 105 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 NSG1P42857 185 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 GCLMP48507 274 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 NDUFA8P51970 172 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 STC1P52823 247 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 UGT2B15P54855 530 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 OR10A3P58181 314 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 TAS2R19P59542 299 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 UBE2MP61081 183 aaKnown RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 RHOAP61586 193 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 TCP10Q12799 353 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 KLRB1Q12918 225 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 OR1Q1Q15612 314 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 GABRA6Q16445 453 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 PLPPR5Q32ZL2 321 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 CDNFQ49AH0 187 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 SMARCD3Q6STE5 483 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 ENPP6Q6UWR7 440 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 ASCL5Q7RTU5 278 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 ZNF429Q86V71 674 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 LRRC25Q8N386 305 aaPredicted RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 EIF4E3Q8N5X7 224 aaKnown RBP2.93□□□□□ -1.94
NUP88-208ENST00000574087 ZNF676Q8N7Q3 588 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 OR2Z1Q8NG97 314 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 GPR32P1Q8NGA4 272 aa2.93□□□□□ -1.94
NUP88-208ENST00000574087 OR4S2Q8NH73 311 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms