RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ZNF782Q6ZMW2 699 aaPredicted RBP6.61□□□□□ -1.35
VPS53-214ENST00000572607 AHSA2Q719I0 299 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 PNKDQ8N490 385 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 BEND2Q8NDZ0 799 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 SGMS2Q8NHU3 365 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 THRSPQ92748 146 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 GGHQ92820 318 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 GAL3ST2Q9H3Q3 398 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 TMEM138Q9NPI0 162 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 PCDHB16Q9NRJ7 776 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 PLCXD1Q9NUJ7 323 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 SCN3BQ9NY72 215 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 IL36RNQ9UBH0 155 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 CLEC2DQ9UHP7 191 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 VPREB3Q9UKI3 123 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 ERGIC3Q9Y282 383 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 LINC00312Q9Y6C7 94 aa6.61□□□□□ -1.35
VPS53-214ENST00000572607 IGKV1-12A0A0C4DH73 117 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 C17orf98A8MV24 154 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 GABRPO00591 440 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 OGG1O15527 345 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 XPNPEP2O43895 674 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 CLPXO76031 633 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 NDUFA7O95182 113 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 OR2H2O95918 312 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 IGKV1D-12P01611 117 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 CSTBP04080 98 aaKnown RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 ARG1P05089 322 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 MDKP21741 143 aaPredicted RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 ERP29P30040 261 aaKnown RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 BDKRB2P30411 391 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 ZNF93P35789 620 aaPredicted RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 WNT4P56705 351 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 ZP1P60852 638 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 DYNC1I2Q13409 638 aaKnown RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 RIPK1Q13546 671 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 LRRC75BQ2VPJ9 315 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 Q499Y3 187 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 DDI2Q5TDH0 399 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 OR52W1Q6IF63 320 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 TPRX1Q8N7U7 411 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 PXT1Q8NFP0 134 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 OR4S1Q8NGB4 309 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 OR52N4Q8NGI2 321 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 RGP1Q92546 391 aaPredicted RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 TFAP2CQ92754 450 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 GHSRQ92847 366 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 MYDGFQ969H8 173 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 FOXRED1Q96CU9 486 aaPredicted RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 NR1H4Q96RI1 486 aaPredicted RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 METTL9Q9H1A3 318 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 RAB18Q9NP72 206 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 ABCB10Q9NRK6 738 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 PAK1IP1Q9NWT1 392 aaPredicted RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 C1RLQ9NZP8 487 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 PSORS1C1Q9UIG5 152 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 ING4Q9UNL4 249 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 UBE2J1Q9Y385 318 aaPredicted RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 TBL2Q9Y4P3 447 aaKnown RBP6.6□□□□□ -1.35
VPS53-214ENST00000572607 MMP24Q9Y5R2 645 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 SESN1Q9Y6P5 492 aa6.6□□□□□ -1.35
VPS53-214ENST00000572607 DOCK11Q5JSL3 2073 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 PNMA8CA0A1B0GUJ8 204 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 MEX3AA1L020 520 aaKnown RBP6.59□□□□□ -1.35
VPS53-214ENST00000572607 CLPSL1A2RUU4 121 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 H0YJX3 145 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 H3BUI4 141 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 H3BUX3 64 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 PSPNO60542 156 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 ZNF780AO75290 641 aaPredicted RBP6.59□□□□□ -1.35
VPS53-214ENST00000572607 HTR3BO95264 441 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 ALDOBP05062 364 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 GNAO1P09471 354 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 IGHV1-8P0DP01 117 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 LMO1P25800 156 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 MAPK3P27361 379 aaPredicted RBP6.59□□□□□ -1.35
VPS53-214ENST00000572607 TGFBR2P37173 567 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 OR3A1P47881 315 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 IL13RA2Q14627 380 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 TAF9Q16594 264 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 AANATQ16613 207 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 PAN3Q58A45 887 aaKnown RBP6.59□□□□□ -1.35
VPS53-214ENST00000572607 KRBOX4Q5JUW0 171 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 OLFML2AQ68BL7 652 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 DMKNQ6E0U4 476 aaPredicted RBP6.59□□□□□ -1.35
VPS53-214ENST00000572607 XAF1Q6GPH4 301 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 ELP2Q6IA86 826 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 HCP5Q6MZN7 132 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 C11orf42Q8N5U0 333 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 ZFP41Q8N8Y5 198 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 DTX3Q8N9I9 347 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 OR51A2Q8NGJ7 313 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 NDNFQ8TB73 568 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 RPS4Y2Q8TD47 263 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 FBLIM1Q8WUP2 373 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 SSX3Q99909 188 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 MND1Q9BWT6 205 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 SLITRK2Q9H156 845 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 PPA2Q9H2U2 334 aa6.59□□□□□ -1.35
VPS53-214ENST00000572607 ING3Q9NXR8 418 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms