RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 METTL7AQ9H8H3 244 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 ZNF160Q9HCG1 818 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 ELOVL5Q9NYP7 299 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 ICAM5Q9UMF0 924 aa9.49□□□□□ -0.89
CLK3-226ENST00000569406 WDFY4Q6ZS81 3184 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 TRAV27A0A087WT01 109 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 C2orf72A6NCS6 295 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 B4DEV8 164 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 GPR137BO60478 399 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SYNGR4O95473 234 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 CT45A8P0DMV1 189 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 CT45A9P0DMV2 189 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 PI3P19957 117 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 CD1BP29016 333 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SLC6A8P48029 635 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 NNATQ16517 81 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 ELOA3BQ3SY89 546 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 CT45A2Q5DJT8 189 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 ELOA3Q8NG57 546 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SPSB1Q96BD6 273 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 ELSPBP1Q96BH3 223 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 OR10C1Q96KK4 312 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 FAM103A1Q9BTL3 118 aaKnown RBP9.48□□□□□ -0.89
CLK3-226ENST00000569406 ETV7Q9Y603 341 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 GTF3C1Q12789 2109 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 CENPVL1A0A0U1RR11 272 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 CDC14CA4D256 554 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 MAP1LC3B2A6NCE7 125 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 HLA-DQA2P01906 255 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 DBHP09172 617 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SMIM10L1P0DMW3 83 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 ESDP10768 282 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 GRK6P43250 576 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 CEACAM21Q3KPI0 293 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SLC48A1Q6P1K1 146 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 TMEM64Q6YI46 380 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 STAC2Q6ZMT1 411 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 MRGPREQ86SM8 312 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 ZNF584Q8IVC4 421 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SFTPA2Q8IWL1 248 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 ZFP62Q8NB50 900 aaPredicted RBP9.48□□□□□ -0.89
CLK3-226ENST00000569406 OR4K13Q8NH42 304 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 OR5AK2Q8NH90 309 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 RASD2Q96D21 266 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SMIM10Q96HG1 83 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 SIGMAR1Q99720 223 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 APOOQ9BUR5 198 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 MAP1LC3BQ9GZQ8 125 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 TMEM38BQ9NVV0 291 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 PGPEP1Q9NXJ5 209 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 RPS21P63220 83 aaKnown RBP9.48□□□□□ -0.89
CLK3-226ENST00000569406 PAFAH1B2P68402 229 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 FZD2Q14332 565 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 ADIRFQ15847 76 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 KIAA1644Q3SXP7 199 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 OR4P4Q8NGL7 312 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 AQP3Q92482 292 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 NKD1Q969G9 470 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 MRGPRFQ96AM1 343 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 TM4SF19Q96DZ7 209 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 BMFQ96LC9 184 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 PRRC1Q96M27 445 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 MTHFD2LQ9H903 347 aaPredicted RBP9.48□□□□□ -0.89
CLK3-226ENST00000569406 KLHL13Q9P2N7 655 aa9.48□□□□□ -0.89
CLK3-226ENST00000569406 FITM1A5D6W6 292 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 CRYGCP07315 174 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 IGLC2P0DOY2 106 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 IGLC3P0DOY3 106 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 GNB3P16520 340 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 OMGP23515 440 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 GABRA3P34903 492 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 RPS20P60866 119 aaKnown RBP9.47□□□□□ -0.89
CLK3-226ENST00000569406 ARF3P61204 181 aaPredicted RBP9.47□□□□□ -0.89
CLK3-226ENST00000569406 ARF1P84077 181 aaKnown RBP9.47□□□□□ -0.89
CLK3-226ENST00000569406 SPOCK1Q08629 439 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 ANKRD16Q6P6B7 361 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 TMEM229BQ8NBD8 167 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 OR1B1Q8NGR6 318 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 ZNF519Q8TB69 540 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 ASB5Q8WWX0 329 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 TMEM45BQ96B21 275 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 ATP5SQ99766 215 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 STRAPQ9Y3F4 350 aaKnown RBP9.47□□□□□ -0.89
CLK3-226ENST00000569406 FREM2Q5SZK8 3169 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 A0A0U1RQK1 487 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 TRAF3IP2O43734 574 aaPredicted RBP9.47□□□□□ -0.89
CLK3-226ENST00000569406 AK4P27144 223 aaPredicted RBP9.47□□□□□ -0.89
CLK3-226ENST00000569406 APOBEC1P41238 236 aaKnown RBP9.47□□□□□ -0.89
CLK3-226ENST00000569406 TPPP2P59282 170 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 DCST2Q5T1A1 773 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 C5orf17Q8NAS9 161 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 SPAARA0A1B0GVQ0 90 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 PRSS38A1L453 326 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 KLF4O43474 513 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 IL2RAP01589 272 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 SEC11BP0C7V7 166 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 TSPOP30536 169 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 ID1P41134 155 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 TMEM225Q6GV28 225 aa9.47□□□□□ -0.89
CLK3-226ENST00000569406 PLXDC2Q6UX71 529 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms