RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 DYRK1AQ13627 763 aa25.64■■□□□ 1.7
CTCF-203ENST00000566078 RBM39Q14498 530 aaKnown RBP25.64■■□□□ 1.7
CTCF-203ENST00000566078 CD177Q8N6Q3 437 aa25.64■■□□□ 1.7
CTCF-203ENST00000566078 ZNF230Q9UIE0 474 aaPredicted RBP25.64■■□□□ 1.7
CTCF-203ENST00000566078 ANAPC10Q9UM13 185 aa25.64■■□□□ 1.7
CTCF-203ENST00000566078 IGKV1D-17A0A075B6S4 117 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 TMEM178BH3BS89 294 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 MZT2BQ6NZ67 158 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 C12orf4Q9NQ89 552 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 ETAA1Q9NY74 926 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 CENPXA8MT69 81 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 IFNL4K9M1U5 179 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 SSX4O60224 188 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 MT-ND4P03905 459 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 PRDX2P32119 198 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 TAS2R19P59542 299 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 COL10A1Q03692 680 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 MICBQ29980 383 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 OR52W1Q6IF63 320 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 TMEM229BQ8NBD8 167 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 OR4S1Q8NGB4 309 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 CHPT1Q8WUD6 406 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 MAFIPQ8WZ33 124 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 C7orf50Q9BRJ6 194 aaKnown RBP25.63■■□□□ 1.69
CTCF-203ENST00000566078 ST6GALNAC5Q9BVH7 336 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 PPA2Q9H2U2 334 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 CHMP1AQ9HD42 196 aaPredicted RBP25.63■■□□□ 1.69
CTCF-203ENST00000566078 METRNQ9UJH8 293 aa25.63■■□□□ 1.69
CTCF-203ENST00000566078 OOEPA6NGQ2 149 aa25.62■■□□□ 1.69
CTCF-203ENST00000566078 LMO1P25800 156 aa25.62■■□□□ 1.69
CTCF-203ENST00000566078 HLA-DMAP28067 261 aa25.62■■□□□ 1.69
CTCF-203ENST00000566078 GABRA2P47869 451 aa25.62■■□□□ 1.69
CTCF-203ENST00000566078 HRASLSQ9HDD0 168 aa25.62■■□□□ 1.69
CTCF-203ENST00000566078 ZNF107Q9UII5 783 aaPredicted RBP25.62■■□□□ 1.69
CTCF-203ENST00000566078 CD3DP04234 171 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 FCGR3AP08637 254 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 DTYMKP23919 212 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 CDKN1AP38936 164 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 RFX2P48378 723 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 HFEQ30201 348 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 TRIM16LQ309B1 348 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 TEX36Q5VZQ5 186 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 GDPD3Q7L5L3 318 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 HOGA1Q86XE5 327 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 CENPSQ8N2Z9 138 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 DEFB108BQ8NET1 73 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 SNAPC3Q92966 411 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 PLEKHF2Q9H8W4 249 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 ZNF222Q9UK12 451 aa25.61■■□□□ 1.69
CTCF-203ENST00000566078 ZNF736B4DX44 427 aaPredicted RBP25.6■■□□□ 1.69
CTCF-203ENST00000566078 PSPNO60542 156 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 AKAIN1P0CW23 69 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 MDH2P40926 338 aaKnown RBP25.6■■□□□ 1.69
CTCF-203ENST00000566078 ATXN7L3Q14CW9 347 aaPredicted RBP25.6■■□□□ 1.69
CTCF-203ENST00000566078 OXA1LQ15070 435 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 STUMQ69YW2 141 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 FAAP20Q6NZ36 180 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 NRARPQ7Z6K4 114 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 ANGPTL6Q8NI99 470 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 NEU4Q8WWR8 484 aaPredicted RBP25.6■■□□□ 1.69
CTCF-203ENST00000566078 CHST6Q9GZX3 395 aa25.6■■□□□ 1.69
CTCF-203ENST00000566078 MUC1P15941 1255 aaPredicted RBP25.59■■□□□ 1.69
CTCF-203ENST00000566078 NAT1P18440 290 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 STEAP1BQ6NZ63 245 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 C20orf204Q6ZNR8 217 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 ASCC1Q8N9N2 400 aaKnown RBP25.59■■□□□ 1.69
CTCF-203ENST00000566078 OR4C16Q8NGL9 310 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 SEBOXQ9HB31 216 aaPredicted RBP25.59■■□□□ 1.69
CTCF-203ENST00000566078 PPIAL4EA0A075B759 164 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 PPIAL4DF5H284 164 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 LYNX1G3V0Z9 82 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 LGALS8O00214 317 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 PPIAL4FP0DN26 164 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 LYNX1P0DP58 116 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 SPNP16150 400 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 AMY2BP19961 511 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 FAUP35544 74 aaKnown RBP25.59■■□□□ 1.69
CTCF-203ENST00000566078 SHEQ5VZ18 495 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 BEST4Q8NFU0 473 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 PLPPR1Q8TBJ4 325 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 ENKURQ8TC29 256 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 DEDD2Q8WXF8 326 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 OCEL1Q9H607 264 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 PPIAL4AQ9Y536 164 aa25.59■■□□□ 1.69
CTCF-203ENST00000566078 TMEM82A0PJX8 343 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 COL8A2P25067 703 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 BTCP35070 178 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 MINDY2Q8NBR6 621 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 OR4D10Q8NGI6 311 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 TMEM165Q9HC07 324 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 MCUBQ9NWR8 336 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 ING3Q9NXR8 418 aa25.58■■□□□ 1.69
CTCF-203ENST00000566078 NAP1L6A6NFF2 107 aa25.57■■□□□ 1.68
CTCF-203ENST00000566078 M0QYG6 137 aa25.57■■□□□ 1.68
CTCF-203ENST00000566078 NAPSAO96009 420 aa25.57■■□□□ 1.68
CTCF-203ENST00000566078 GYPAP02724 150 aa25.57■■□□□ 1.68
CTCF-203ENST00000566078 OR3A1P47881 315 aa25.57■■□□□ 1.68
CTCF-203ENST00000566078 Q6ZPA2 131 aa25.57■■□□□ 1.68
CTCF-203ENST00000566078 C17orf107Q6ZR85 190 aa25.57■■□□□ 1.68
CTCF-203ENST00000566078 USP9YO00507 2555 aaPredicted RBP25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms