RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 CHST6Q9GZX3 395 aa16.06■□□□□ 0.16
CSPG4P13-201ENST00000565545 C11orf54Q9H0W9 315 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P13-201ENST00000565545 IFT46Q9NQC8 304 aa16.06■□□□□ 0.16
CSPG4P13-201ENST00000565545 ELF5Q9UKW6 265 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P13-201ENST00000565545 ANAPC10Q9UM13 185 aa16.06■□□□□ 0.16
CSPG4P13-201ENST00000565545 PPP1R3CQ9UQK1 317 aa16.06■□□□□ 0.16
CSPG4P13-201ENST00000565545 MAP1AP78559 2803 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P13-201ENST00000565545 LINC00854A0A1B0GVQ3 168 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 MCRIP1C9JLW8 97 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 SNU13P55769 128 aaKnown RBP16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 CCL8P80075 99 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 SPRNQ5BIV9 151 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 CENPSQ8N2Z9 138 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 CMSS1Q9BQ75 279 aaKnown RBP16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 SULT4A1Q9BR01 284 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 SAP30LQ9HAJ7 183 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 IL36RNQ9UBH0 155 aa16.05■□□□□ 0.16
CSPG4P13-201ENST00000565545 ARFGEF3Q5TH69 2177 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 DYSFO75923 2080 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 POM121CA8CG34 1229 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 ZNF44P15621 663 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 NAT1P18440 290 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 TBPP20226 339 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 DTYMKP23919 212 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 LMO1P25800 156 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 SHEQ5VZ18 495 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 OLFML2AQ68BL7 652 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 DCDC5Q6ZRR9 648 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 GDPD3Q7L5L3 318 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 DTX2Q86UW9 622 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 GCSAMQ8N6F7 178 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 RIMS4Q9H426 269 aaPredicted RBP16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 AK3Q9UIJ7 227 aa16.04■□□□□ 0.16
CSPG4P13-201ENST00000565545 ROS1P08922 2347 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 MEIS3P1A6NDR6 274 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 VGLL3A8MV65 326 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 OR2H2O95918 312 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 HAND1O96004 215 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 AKAIN1P0CW23 69 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 DUSP1P28562 367 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 MDH2P40926 338 aaKnown RBP16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 PDCD1Q15116 288 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 RTN4RL2Q86UN3 420 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 C1orf87Q8N0U7 546 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 SUMF2Q8NBJ7 301 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 MBD6Q96DN6 1003 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 DPCDQ9BVM2 203 aaPredicted RBP16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 WDR13Q9H1Z4 485 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 HRASLSQ9HDD0 168 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 DLL4Q9NR61 685 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 TREM2Q9NZC2 230 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 ZNF581Q9P0T4 197 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 NLKQ9UBE8 527 aa16.03■□□□□ 0.16
CSPG4P13-201ENST00000565545 TRAV24A0A0B4J272 114 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 FAM240BA0A1B0GVZ2 78 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 ZNF736B4DX44 427 aaPredicted RBP16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 WNT9BO14905 357 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 CD74P04233 296 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 DANCRP0C864 163 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 EGR1P18146 543 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 RFX2P48378 723 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 KCNJ3P48549 501 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 GMFBP60983 142 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 ACTBL2Q562R1 376 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 Q71RC1 249 aaPredicted RBP16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 NRARPQ7Z6K4 114 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 HOGA1Q86XE5 327 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 ENKURQ8TC29 256 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 RAB1BQ9H0U4 201 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 DNAJB11Q9UBS4 358 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 WIPI2Q9Y4P8 454 aa16.02■□□□□ 0.16
CSPG4P13-201ENST00000565545 TANC2Q9HCD6 1990 aa16.02■□□□□ 0.15
CSPG4P13-201ENST00000565545 UBE2QL1A1L167 161 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 H7C1Q1 480 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 SLC33A1O00400 549 aaPredicted RBP16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 MUC1P15941 1255 aaPredicted RBP16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 MEF2DQ14814 521 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 SRSF7Q16629 238 aaKnown RBP eCLIP16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 DEFB113Q30KQ7 82 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 PAN3Q58A45 887 aaKnown RBP16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 C11orf71Q6IPW1 123 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 STEAP1BQ6NZ63 245 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 Q6ZNX1 250 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 ZCCHC24Q8N2G6 241 aaKnown RBP16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 DUSP18Q8NEJ0 188 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 NEK7Q8TDX7 302 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 TRAF4Q9BUZ4 470 aaPredicted RBP16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 C12orf4Q9NQ89 552 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 COPZ2Q9P299 210 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 OR14J1Q9UGF5 321 aa16.01■□□□□ 0.15
CSPG4P13-201ENST00000565545 RAI1Q7Z5J4 1906 aaPredicted RBP16■□□□□ 0.15
CSPG4P13-201ENST00000565545 RFPL4AA6NLU0 287 aa16■□□□□ 0.15
CSPG4P13-201ENST00000565545 RFPL4AL1F8VTS6 287 aa16■□□□□ 0.15
CSPG4P13-201ENST00000565545 CD8AP01732 235 aa16■□□□□ 0.15
CSPG4P13-201ENST00000565545 SLC6A1P30531 599 aa16■□□□□ 0.15
CSPG4P13-201ENST00000565545 TEX36Q5VZQ5 186 aa16■□□□□ 0.15
CSPG4P13-201ENST00000565545 BRICD5Q6PL45 260 aa16■□□□□ 0.15
CSPG4P13-201ENST00000565545 CCBE1Q6UXH8 406 aaPredicted RBP16■□□□□ 0.15
CSPG4P13-201ENST00000565545 GVQW1Q8N7I0 195 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms