RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 LYPD6Q86Y78 171 aa13.17□□□□□ -0.3
RAB40C-208ENST00000564703 KCNG3Q8TAE7 436 aa13.17□□□□□ -0.3
RAB40C-208ENST00000564703 SELENOIQ9C0D9 397 aa13.17□□□□□ -0.3
RAB40C-208ENST00000564703 SIRPDQ9H106 197 aa13.17□□□□□ -0.3
RAB40C-208ENST00000564703 PPA2Q9H2U2 334 aa13.17□□□□□ -0.3
RAB40C-208ENST00000564703 BANF2Q9H503 90 aa13.17□□□□□ -0.3
RAB40C-208ENST00000564703 SPACA1Q9HBV2 294 aa13.17□□□□□ -0.3
RAB40C-208ENST00000564703 TXNL4BQ9NX01 149 aaKnown RBP13.17□□□□□ -0.3
RAB40C-208ENST00000564703 NIPBLQ6KC79 2804 aaeCLIP13.17□□□□□ -0.3
RAB40C-208ENST00000564703 SLC33A1O00400 549 aaPredicted RBP13.16□□□□□ -0.3
RAB40C-208ENST00000564703 SLC17A2O00624 439 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 GEMIN2O14893 280 aaKnown RBP13.16□□□□□ -0.3
RAB40C-208ENST00000564703 CD37P11049 281 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 ARSBP15848 533 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 MGMTP16455 207 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 JUNBP17275 347 aaPredicted RBP13.16□□□□□ -0.3
RAB40C-208ENST00000564703 RAB3BP20337 219 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 EPHA1P21709 976 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 ERP29P30040 261 aaKnown RBP13.16□□□□□ -0.3
RAB40C-208ENST00000564703 OR3A1P47881 315 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 BPIFB3P59826 476 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 RAB11BQ15907 218 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 TAF9Q16594 264 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 VMO1Q7Z5L0 202 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 TRAPPC6BQ86SZ2 158 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 TPRA1Q86W33 373 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 BPIFB2Q8N4F0 458 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 NEK7Q8TDX7 302 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 POM121Q96HA1 1249 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 KCTD7Q96MP8 289 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 CHCHD6Q9BRQ6 235 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 OR51E2Q9H255 320 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 METTL8Q9H825 291 aaKnown RBP13.16□□□□□ -0.3
RAB40C-208ENST00000564703 ING3Q9NXR8 418 aa13.16□□□□□ -0.3
RAB40C-208ENST00000564703 TRGV10A0A0A0MS01 117 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 TRAV40A0A0B4J280 105 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 LOC100506127A0A0U1RQW1 187 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 A0A1W2PP11 408 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 HSPB6O14558 160 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 SLC22A1O15245 554 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 BPNT1O95861 308 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 MPIG6BO95866 241 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 CSN2P05814 226 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 KCNJ3P48549 501 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 P2RX3P56373 397 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 AESQ08117 197 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 RBM39Q14498 530 aaKnown RBP13.15□□□□□ -0.3
RAB40C-208ENST00000564703 KRBOX4Q5JUW0 171 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 RBMS3Q6XE24 437 aaKnown RBP13.15□□□□□ -0.3
RAB40C-208ENST00000564703 GDPGP1Q6ZNW5 385 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 LHX4Q969G2 390 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 FAM46BQ96A09 425 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 DPCDQ9BVM2 203 aaPredicted RBP13.15□□□□□ -0.3
RAB40C-208ENST00000564703 IFT22Q9H7X7 185 aa13.15□□□□□ -0.3
RAB40C-208ENST00000564703 IGHV3OR16-10A0A075B7F0 116 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 TRAV24A0A0B4J272 114 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A10PA6NDY2 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A18PA6NE21 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A16PA6NEW6 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A20PA6NIJ5 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A8PA6NJQ4 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A7PA6NKC0 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A22PA8MWA6 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A12PA8MX19 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A5PA8MXJ8 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A23PA8MXZ1 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 MCRIP1C9JLW8 97 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A15PP0C7V4 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A13PP0C7W8 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A14PP0C7W9 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 FAM90A24PP0C7X0 464 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 ZNF728P0DKX0 622 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 VSIG8P0DPA2 414 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 MMP9P14780 707 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 PRTN3P24158 256 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 GADD45AP24522 165 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 GUCA2AQ02747 115 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 P2RY14Q15391 338 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 KLF17Q5JT82 389 aaPredicted RBP13.14□□□□□ -0.31
RAB40C-208ENST00000564703 NCR3LG1Q68D85 454 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 TPRX1Q8N7U7 411 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 ZNF565Q8N9K5 539 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 SUMF2Q8NBJ7 301 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 TMEM104Q8NE00 496 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 ZNF418Q8TF45 676 aaPredicted RBP13.14□□□□□ -0.31
RAB40C-208ENST00000564703 TBX15Q96SF7 602 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 URM1Q9BTM9 101 aaKnown RBP13.14□□□□□ -0.31
RAB40C-208ENST00000564703 TMEM59Q9BXS4 323 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 HEXA-AS1Q9H8Q6 139 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 SIRT7Q9NRC8 400 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 STEAP1Q9UHE8 339 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 LINC00312Q9Y6C7 94 aa13.14□□□□□ -0.31
RAB40C-208ENST00000564703 CENPVL3A0A0U1RRI6 287 aa13.13□□□□□ -0.31
RAB40C-208ENST00000564703 TRIM64CA6NLI5 447 aa13.13□□□□□ -0.31
RAB40C-208ENST00000564703 FSHBP01225 129 aa13.13□□□□□ -0.31
RAB40C-208ENST00000564703 IGHV4-38-2P0DP08 117 aa13.13□□□□□ -0.31
RAB40C-208ENST00000564703 FUT3P21217 361 aa13.13□□□□□ -0.31
RAB40C-208ENST00000564703 GLIPR1P48060 266 aa13.13□□□□□ -0.31
RAB40C-208ENST00000564703 ATXN7L3Q14CW9 347 aaPredicted RBP13.13□□□□□ -0.31
RAB40C-208ENST00000564703 C2orf76Q3KRA6 126 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms