RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 GLRXP35754 106 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 NKX2-1P43699 371 aaPredicted RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 P2RY1P47900 373 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 SLC18A1P54219 525 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 AQP5P55064 265 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 DSCR9P59020 149 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 RPL27P61353 136 aaKnown RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 OSTNP61366 133 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 TIMM10P62072 90 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 RPS27AP62979 156 aaKnown RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 HOXC5Q00444 222 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 EWSR1Q01844 656 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS35-205ENST00000563984 GAGE4Q13068 117 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 PPP1R1AQ13522 171 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 RUNX3Q13761 415 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 HMGN3Q15651 99 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 CCSMST1Q4G0I0 132 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 TRMT12Q53H54 448 aaKnown RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 CT45A1Q5HYN5 189 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 C1orf220Q5T0J3 134 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 TMEM244Q5VVB8 128 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 TEX36Q5VZQ5 186 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 MFSD12Q6NUT3 480 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ADAMTSL5Q6ZMM2 481 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 MOB1BQ7L9L4 216 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 PRSS45Q7RTY3 260 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 MOB3BQ86TA1 216 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 SLC47A2Q86VL8 602 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 CMTM1Q8IZ96 169 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 HIST3H2BBQ8N257 126 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OSR2Q8N2R0 312 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ZADH2Q8N4Q0 377 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 EID2Q8N6I1 236 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 RBMXL3Q8N7X1 1067 aaKnown RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 FER1L6-AS1Q8NA97 138 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OR1S2Q8NGQ3 325 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OR2G3Q8NGZ4 309 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 CT45A3Q8NHU0 189 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 C10orf82Q8WW14 230 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 TMED6Q8WW62 240 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 NEIL2Q969S2 332 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 LRRC58Q96CX6 371 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 DIRAS2Q96HU8 199 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OR6C1Q96RD1 312 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ATP5SQ99766 215 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 AGPAT1Q99943 283 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 SLC25A33Q9BSK2 321 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 EBPLQ9BY08 206 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 SMIM3Q9BZL3 60 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 POPDC3Q9HBV1 291 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 RETNQ9HD89 108 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 KCNJ16Q9NPI9 418 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 GPR84Q9NQS5 396 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 UQCC1Q9NVA1 299 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ZNF629Q9UEG4 869 aaPredicted RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 SLC23A2Q9UGH3 650 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 ABT1Q9ULW3 272 aaKnown RBP4.3□□□□□ -1.72
VPS35-205ENST00000563984 TCF19Q9Y242 345 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 TP53TG1Q9Y2A0 90 aa4.3□□□□□ -1.72
VPS35-205ENST00000563984 OTOFQ9HC10 1997 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 TRAV36DV7A0A075B6V5 113 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 A0A087WUU8 490 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 A0A0A0MQY5 61 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 NSG1A0A0A6YYJ2 146 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 CASTOR2A6NHX0 329 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 FABP5P3A8MUU1 101 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 F5H5K5 113 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 HSD17B6O14756 317 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 CRXO43186 299 aaPredicted RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 ZNF207O43670 478 aaKnown RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 SYNGR1O43759 233 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 FAM189A1O60320 539 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 EIF4E2O60573 245 aaKnown RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 LDB3O75112 727 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 GCM2O75603 506 aaPredicted RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 HPNP05981 417 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 PRSS2P07478 247 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 GZMBP10144 247 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 PSMB1P20618 241 aaKnown RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 IDSP22304 550 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 MIPP30301 263 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 HRH1P35367 487 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 TGFBR1P36897 503 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 LEPP41159 167 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 ZFP36L2P47974 494 aaKnown RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 SGSHP51688 502 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 HCCSP53701 268 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 EMP1P54849 157 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 RAB38P57729 211 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 TAS2R20P59543 309 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 GABARAPL2P60520 117 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 BTG1P62324 171 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 RPL31P62899 125 aaKnown RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 SLC35A2P78381 396 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 OC90Q02509 493 aaPredicted RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 HIST1H1AQ02539 215 aaPredicted RBP4.29□□□□□ -1.72
VPS35-205ENST00000563984 IL10RBQ08334 325 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 HSD52Q0P140 79 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 LY6DQ14210 128 aa4.29□□□□□ -1.72
VPS35-205ENST00000563984 OPCMLQ14982 345 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms