RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 C10orf35Q96D05 121 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 ANGPTL4Q9BY76 406 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 OR51M1Q9H341 326 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 BCO1Q9HAY6 547 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 OCIAD1Q9NX40 245 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 C19orf25Q9UFG5 118 aaPredicted RBP11.41□□□□□ -0.58
CLN3-210ENST00000563874 LIPGQ9Y5X9 500 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 CACNA1EQ15878 2313 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 HSPB6O14558 160 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 GATCO43716 136 aaKnown RBP11.41□□□□□ -0.58
CLN3-210ENST00000563874 PPYP01298 95 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 LMO1P25800 156 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 NPBWR2P48146 333 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 ZNF92Q03936 586 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 PLCXD3Q63HM9 321 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 FOXL2NBQ6ZUU3 175 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 CALHM1Q8IU99 346 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 OR1F12Q8NHA8 337 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 FGFBP3Q8TAT2 258 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 MR1Q95460 341 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 SLC7A11Q9UPY5 501 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 UBE2J1Q9Y385 318 aaPredicted RBP11.41□□□□□ -0.58
CLN3-210ENST00000563874 RBFOX3A6NFN3 312 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 MPPED1O15442 326 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 TCN2P20062 427 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 IGFBP4P22692 258 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 G0S2P27469 103 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 NKX2-1P43699 371 aaPredicted RBP11.41□□□□□ -0.58
CLN3-210ENST00000563874 MRPS34P82930 218 aaKnown RBP11.41□□□□□ -0.58
CLN3-210ENST00000563874 MALLQ13021 153 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 KIAA0141Q14154 515 aaPredicted RBP11.41□□□□□ -0.58
CLN3-210ENST00000563874 Q6ZSR3 168 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 P4HA3Q7Z4N8 544 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 OR5C1Q8NGR4 320 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 CCDC74BQ96LY2 380 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 TCEAL7Q9BRU2 100 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 TMED3Q9Y3Q3 217 aa11.41□□□□□ -0.58
CLN3-210ENST00000563874 ZNF407Q9C0G0 2248 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 H3BQ15 152 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 LIFP15018 202 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 SPINK2P20155 84 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 PMELP40967 661 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 RND3P61587 244 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 RAB35Q15286 201 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 OR14L1PQ8NHC6 308 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 NAT6Q93015 286 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 PROK2Q9HC23 129 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 GLRX2Q9NS18 164 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 SLC7A10Q9NS82 523 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 PPIHO43447 177 aaKnown RBP11.4□□□□□ -0.58
CLN3-210ENST00000563874 ADAM20O43506 726 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 PDCD6O75340 191 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 VAMP5O95183 116 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 EPHA1P21709 976 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 GNRHRP30968 328 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 PCOLCEQ15113 449 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 HEPN1Q6WQI6 88 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 LHFPL2Q6ZUX7 228 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 SLC25A26Q70HW3 274 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 TBC1D26Q86UD7 250 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 ZNF695Q8IW36 515 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 CCDC71LQ8N9Z2 235 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 KDF1Q8NAX2 398 aaPredicted RBP11.4□□□□□ -0.58
CLN3-210ENST00000563874 RAB39BQ96DA2 213 aa11.4□□□□□ -0.58
CLN3-210ENST00000563874 FRYQ5TBA9 3013 aa11.4□□□□□ -0.59
CLN3-210ENST00000563874 TERTO14746 1132 aaKnown RBP11.39□□□□□ -0.59
CLN3-210ENST00000563874 IFNA17P01571 189 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 IGHV3-9P01782 118 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 TAGLN2P37802 199 aaKnown RBP11.39□□□□□ -0.59
CLN3-210ENST00000563874 TSC22D1Q15714 1073 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 SPSB3Q6PJ21 355 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 YRDCQ86U90 279 aaKnown RBP11.39□□□□□ -0.59
CLN3-210ENST00000563874 FAM186AA6NE01 2351 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 ZNF587BE7ETH6 402 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 PROB1E7EW31 1015 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 TNFSF12O43508 249 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 TMEM50AO95807 157 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 S100PP25815 95 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 FKBP2P26885 142 aaKnown RBP11.39□□□□□ -0.59
CLN3-210ENST00000563874 NDUFA6P56556 154 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 PSG4Q00888 419 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 TMEM252Q8N6L7 170 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 CYB561D1Q8N8Q1 229 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 LFNGQ8NES3 379 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 TMEM222Q9H0R3 208 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 IGHV2-70P01814 119 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 DYNLT3P51808 116 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 DSCR4P56555 118 aaPredicted RBP11.39□□□□□ -0.59
CLN3-210ENST00000563874 UBE2KP61086 200 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 COTL1Q14019 142 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 ZNF266Q14584 549 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 CDPF1Q6NVV7 123 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 ZNF611Q8N823 705 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 MUCL1Q96DR8 90 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 HS3ST6Q96QI5 342 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 GGACTQ9BVM4 153 aa11.39□□□□□ -0.59
CLN3-210ENST00000563874 PAPOLGQ9BWT3 736 aaKnown RBP11.39□□□□□ -0.59
CLN3-210ENST00000563874 TRDCB7Z8K6 153 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 CXCL1P09341 107 aa11.38□□□□□ -0.59
CLN3-210ENST00000563874 JMJD7P0C870 316 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms