RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GLDNQ6ZMI3 551 aaPredicted RBP7.58□□□□□ -1.2
VPS39-207ENST00000563692 C20orf204Q6ZNR8 217 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 WFDC8Q8IUA0 241 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 TGIF2LYQ8IUE0 185 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 ZDHHC22Q8N966 263 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 TERB2Q8NHR7 220 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 SNAPC3Q92966 411 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 SLC6A7Q99884 636 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 UBTD1Q9HAC8 227 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 CHMP1AQ9HD42 196 aaPredicted RBP7.58□□□□□ -1.2
VPS39-207ENST00000563692 ZNF701Q9NV72 531 aaPredicted RBP7.58□□□□□ -1.2
VPS39-207ENST00000563692 AK3Q9UIJ7 227 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 POU2F3Q9UKI9 436 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 FLVCR2Q9UPI3 526 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 A0A0B4J293 547 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 TMEM82A0PJX8 343 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 POM121CA8CG34 1229 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 DEFB108AA8MXU0 73 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 H0YL77 283 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 CDIPTO14735 213 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 SH2D1BO14796 132 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 NOS1APO75052 506 aaPredicted RBP7.57□□□□□ -1.2
VPS39-207ENST00000563692 TNFSF4P23510 183 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 NKX6-1P78426 367 aaPredicted RBP7.57□□□□□ -1.2
VPS39-207ENST00000563692 MAB21L1Q13394 359 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 CDK10Q15131 360 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 MICBQ29980 383 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 C4orf46Q504U0 113 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 SPIN3Q5JUX0 258 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 VHLLQ6RSH7 139 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 NUP37Q8NFH4 326 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 OR6F1Q8NGZ6 308 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 NEK7Q8TDX7 302 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 GTF3AQ92664 365 aaKnown RBP7.57□□□□□ -1.2
VPS39-207ENST00000563692 CCL19Q99731 98 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 SULT4A1Q9BR01 284 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 BEX2Q9BXY8 128 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 PPA2Q9H2U2 334 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 ESRP2Q9H6T0 727 aaKnown RBP7.57□□□□□ -1.2
VPS39-207ENST00000563692 IFT22Q9H7X7 185 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 BEX1Q9HBH7 125 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 ZNF286AQ9HBT8 521 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 MYOZ1Q9NP98 299 aaPredicted RBP7.57□□□□□ -1.2
VPS39-207ENST00000563692 C12orf4Q9NQ89 552 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 NECAP2Q9NVZ3 263 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 RASL12Q9NYN1 266 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 ZNF230Q9UIE0 474 aaPredicted RBP7.57□□□□□ -1.2
VPS39-207ENST00000563692 ANXA10Q9UJ72 324 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 FZR1Q9UM11 496 aa7.57□□□□□ -1.2
VPS39-207ENST00000563692 PRRC2AP48634 2157 aaKnown RBP7.57□□□□□ -1.2
VPS39-207ENST00000563692 A0A1B0GWJ7 208 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 A6NLC8 198 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 F5H5P2 479 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 BOLA2-SMG1P6H3BVE0 249 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 MLNRO43193 412 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 RHBDL1O75783 438 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 NXPH2O95156 264 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 PGA5P0DJD9 388 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ZNF44P15621 663 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ANXA7P20073 488 aaKnown RBP7.56□□□□□ -1.2
VPS39-207ENST00000563692 MDH2P40926 338 aaKnown RBP7.56□□□□□ -1.2
VPS39-207ENST00000563692 CD200P41217 278 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 TAS2R31P59538 309 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 CD83Q01151 205 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ZNF154Q13106 437 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 PDCD1Q15116 288 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ZFP69Q49AA0 526 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 SHEQ5VZ18 495 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 FAHD2BQ6P2I3 314 aaPredicted RBP7.56□□□□□ -1.2
VPS39-207ENST00000563692 C11orf88Q6PI97 169 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 BRICD5Q6PL45 260 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 SLC22A25Q6T423 547 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 OVCH2Q7RTZ1 564 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 SLC36A1Q7Z2H8 476 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 TMED4Q7Z7H5 227 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 TCTE3Q8IZS6 198 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 BATF2Q8N1L9 274 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 POC1AQ8NBT0 407 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 OR2Z1Q8NG97 314 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 FAHD2AQ96GK7 314 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ST6GAL2Q96JF0 529 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 NRIP2Q9BQI9 281 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 TLNRD1Q9H1K6 362 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 MSL2Q9HCI7 577 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 EHFQ9NZC4 300 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 TAAR3PQ9P1P4 343 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ZNF69Q9UC07 566 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ZNF222Q9UK12 451 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ZDHHC8Q9ULC8 765 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 ATP23Q9Y6H3 246 aa7.56□□□□□ -1.2
VPS39-207ENST00000563692 C2CD3Q4AC94 2353 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 MED13LQ71F56 2210 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 IGLV3-9A0A075B6K5 115 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 KIR2DS1A0A191URI9 304 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.55□□□□□ -1.2
VPS39-207ENST00000563692 ATP6V1G2-DDX39BF2Z307 99 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 F8VVB4 439 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 F8VWA3 439 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 ABCD4O14678 606 aa7.55□□□□□ -1.2
VPS39-207ENST00000563692 HS3ST1O14792 307 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms