RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 OR2AT4A6NND4 320 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 H7C417 338 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 GOSR2O14653 212 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 CSF1P09603 554 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 CSF3P09919 207 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF728P0DKX0 622 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 APOBEC3AP31941 199 aaPredicted RBP4.65□□□□□ -1.67
VPS13C-209ENST00000560637 CEBPGP53567 150 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 RPL31P62899 125 aaKnown RBP4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF816Q0VGE8 651 aaPredicted RBP4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ARL6IP1Q15041 203 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 AKIRIN2Q53H80 203 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 MOB3BQ86TA1 216 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 SGPP2Q8IWX5 399 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 PIP4P2Q8N4L2 257 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 OR5A2Q8NGI9 324 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 SMIM3Q9BZL3 60 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ELOVL5Q9NYP7 299 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 FOXJ3Q9UPW0 622 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 SLC25A15Q9Y619 301 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 TRAV1-2A0A0B4J238 106 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 TRAV38-1A0A0B4J264 116 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 IGHV1-69-2A0A0G2JMI3 117 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 A0A1B0GTI1 187 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 hCG_38984A0A1B0GV85 526 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 A6NJY4 79 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 PDCD6O75340 191 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 SLC22A5O76082 557 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 IGF2P01344 180 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 IFNA17P01571 189 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 HPXP02790 462 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ALDOBP05062 364 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ANXA3P12429 323 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ANOS1P23352 680 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 CD34P28906 385 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 PRDX2P32119 198 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 SRP14P37108 136 aaKnown RBP4.65□□□□□ -1.67
VPS13C-209ENST00000560637 CEACAM6P40199 344 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 DLX1P56177 255 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 CDK10Q15131 360 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 CEACAM21Q3KPI0 293 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 ZFP69Q49AA0 526 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 C4orf48Q5BLP8 95 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 IGFL2Q6UWQ7 119 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 WDR31Q8NA23 367 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 OR52B4Q8NGK2 314 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 SSC4DQ8WTU2 575 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 HAVCR1Q96D42 359 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 OPA3Q9H6K4 179 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 SPACA1Q9HBV2 294 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 MRPS18AQ9NVS2 196 aaKnown RBP4.65□□□□□ -1.67
VPS13C-209ENST00000560637 HILPDAQ9Y5L2 63 aa4.65□□□□□ -1.67
VPS13C-209ENST00000560637 A0A0U1RQV5 110 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 TMEM82A0PJX8 343 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 HMX3A6NHT5 357 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 NPIPB13A6NJU9 1138 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 NPIPB4C9JG80 1138 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SMLR1H3BR10 107 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 CREBL2O60519 120 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SCGNO76038 276 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 OR2F2O95006 317 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 MMP7P09237 267 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 HIST1H1DP16402 221 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 PAX6P26367 422 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 PPP1CCP36873 323 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF133P52736 654 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 C4orf17Q53FE4 359 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SPINK9Q5DT21 86 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 TEX30Q5JUR7 227 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 WBP1Q96G27 269 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 NARS2Q96I59 477 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 DPCDQ9BVM2 203 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 TAF9BQ9HBM6 251 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 ENY2Q9NPA8 101 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 AK3Q9UIJ7 227 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 TUBD1Q9UJT1 453 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 WIPI2Q9Y4P8 454 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 ETV7Q9Y603 341 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 YLPM1P49750 1951 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 LRP4O75096 1905 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 TEP1Q99973 2627 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 IGKV1-9A0A0C4DH69 117 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 NCBP2LA6PVI3 153 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 F8VVB4 439 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 F8VWA3 439 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF701M0R085 212 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 M0R1X1 148 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 FABP7O15540 132 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 LPLP06858 475 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 GPR12P47775 334 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 GLIPR1P48060 266 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 TATDN3Q17R31 274 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 Q3ZCU0 254 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 ZNF787Q6DD87 383 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 RPUSD3Q6P087 351 aaKnown RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 C22orf34Q6ZV56 151 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 RTN4RL2Q86UN3 420 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 KDF1Q8NAX2 398 aaPredicted RBP4.64□□□□□ -1.67
VPS13C-209ENST00000560637 SUMF2Q8NBJ7 301 aa4.64□□□□□ -1.67
VPS13C-209ENST00000560637 OR4C16Q8NGL9 310 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms