RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LOC107986453A0A1B0GWG9 222 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 A0A1B0GX30 115 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 ODAMA1E959 279 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 ZNF729A6NN14 1252 aaPredicted RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 LY6LH3BQJ8 138 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 M0R129 80 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 DEGS1O15121 323 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 MITFO75030 526 aaPredicted RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 AMY1AP04745 511 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 AMY2AP04746 511 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 ISG15P05161 165 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 CSN2P05814 226 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 VSIG8P0DPA2 414 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 EPHA2P29317 976 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 HOXD3P31249 432 aaPredicted RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 MYCNOSP40205 109 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 OR3A4PP47883 348 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 GP2P55259 537 aaKnown RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 SLC35B1P78383 322 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 BNIP1Q12981 228 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 RBM39Q14498 530 aaKnown RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 KRBOX4Q5JUW0 171 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 KDM4DQ6B0I6 523 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 C11orf87Q6NUJ2 197 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 BAIAP2L2Q6UXY1 529 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 MRPL41Q8IXM3 137 aaKnown RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 SAXO1Q8IYX7 474 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 PRSS35Q8N3Z0 413 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 COMMD1Q8N668 190 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 OR8J1Q8NGP2 316 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 OR9G1Q8NH87 305 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 UTP4Q969X6 686 aaKnown RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 FGGYQ96C11 551 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 ADAT3Q96EY9 351 aaPredicted RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 HRASLS5Q96KN8 279 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 OPALINQ96PE5 141 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 ZNF649Q9BS31 505 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 COMMD4Q9H0A8 199 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 ZNF286AQ9HBT8 521 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 GNG8Q9UK08 70 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 MOB4Q9Y3A3 225 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 RRP15Q9Y3B9 282 aaKnown RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 AMMECR1Q9Y4X0 333 aaPredicted RBP7.29□□□□□ -1.24
HDDC3-204ENST00000559834 HSPE1-MOB4S4R3N1 261 aa7.29□□□□□ -1.24
HDDC3-204ENST00000559834 KIAA2026Q5HYC2 2103 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 KBTBD11-OT1A0A1B0GTJ5 212 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM172BPA6NC97 362 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A18PA6NE21 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A16PA6NEW6 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A20PA6NIJ5 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 SH2D7A6NKC9 451 aaPredicted RBP7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A9PA6NNJ1 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A12PA8MX19 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A5PA8MXJ8 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 NUDT19A8MXV4 375 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 KDM4BO94953 1096 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 MT-ND2P03891 347 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 RPSAP08865 295 aaKnown RBP7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A15PP0C7V4 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A13PP0C7W8 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A14PP0C7W9 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FAM90A24PP0C7X0 464 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 NHLRC4P0CG21 123 aaPredicted RBP7.28□□□□□ -1.24
HDDC3-204ENST00000559834 TMEM225BP0DP42 221 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 DBTP11182 482 aaKnown RBP7.28□□□□□ -1.24
HDDC3-204ENST00000559834 NFYBP25208 207 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 FASP25445 335 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 C21orf33P30042 268 aaPredicted RBP7.28□□□□□ -1.24
HDDC3-204ENST00000559834 THBS3P49746 956 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 RPL23AP62750 156 aaKnown RBP7.28□□□□□ -1.24
HDDC3-204ENST00000559834 HES1Q14469 280 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 ATP6AP1Q15904 470 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 C10orf99Q6UWK7 81 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 OR2G2Q8NGZ5 317 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 TOMM40LQ969M1 308 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 MYCBPQ99417 103 aaPredicted RBP7.28□□□□□ -1.24
HDDC3-204ENST00000559834 BARHL1Q9BZE3 327 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 NCOR1P1Q9H4R4 102 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 ING3Q9NXR8 418 aa7.28□□□□□ -1.24
HDDC3-204ENST00000559834 IGKV1-12A0A0C4DH73 117 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 DAPL1A0PJW8 107 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 SERPINE3A8MV23 424 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 J3QR06 171 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 FGF16O43320 207 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 RAMP3O60896 148 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 APOL3O95236 402 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 IGKV1D-12P01611 117 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 SNRNP70P08621 437 aaKnown RBP7.27□□□□□ -1.25
HDDC3-204ENST00000559834 HTR1AP08908 422 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 GDNFP39905 211 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 KIR3DL2P43630 455 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 RAB7AP51149 207 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 CCR9P51686 369 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 ISL1P61371 349 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 DGCR2P98153 550 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 MADCAM1Q13477 382 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 C17orf58Q2M2W7 97 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 TP53I3Q53FA7 332 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 Q6P435 159 aa7.27□□□□□ -1.25
HDDC3-204ENST00000559834 FDX2Q6P4F2 183 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms