RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ANKUB1A6NFN9 424 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 RBMXL2O75526 392 aaKnown RBP9.85□□□□□ -0.83
LDLR-208ENST00000558518 DHRS3O75911 302 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 METTL15P1P0C7V9 234 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 PGA3P0DJD8 388 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 CFPP27918 469 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 IL15RAQ13261 267 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 Q3ZCU0 254 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 RTL10Q7L3V2 364 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 IER2Q9BTL4 223 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 C3orf85A0A1B0GTC6 90 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 IFNA5P01569 189 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 CELA2AP08217 269 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 HNF1AP20823 631 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 MPZP25189 248 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 MALLQ13021 153 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 PHYHD1Q5SRE7 291 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 TMEM252Q8N6L7 170 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 SCGB1C1Q8TD33 95 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 DEFB126Q9BYW3 111 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 MTIF3Q9H2K0 278 aaKnown RBP9.85□□□□□ -0.83
LDLR-208ENST00000558518 OPA3Q9H6K4 179 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 PISDQ9UG56 409 aa9.85□□□□□ -0.83
LDLR-208ENST00000558518 SCGB1D1O95968 90 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 CD55P08174 381 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 STARD6P59095 220 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 RTP5Q14D33 572 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 OR8G1Q15617 311 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 TBC1D26Q86UD7 250 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 SLC7A10Q9NS82 523 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 EPOPA6NHQ4 379 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 HS3ST1O14792 307 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 SRP19P09132 144 aaKnown RBP9.84□□□□□ -0.83
LDLR-208ENST00000558518 LYL1P12980 280 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 MSR1P21757 451 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 LSM6P62312 80 aaKnown RBP9.84□□□□□ -0.83
LDLR-208ENST00000558518 HLA-DRB3P79483 266 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 ZXDAP98168 799 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 CLN3Q13286 438 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 LILRB2Q8N423 598 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 GJC3Q8NFK1 279 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 PRDM13Q9H4Q3 707 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 VSIRQ9H7M9 311 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 GLRX2Q9NS18 164 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 HS3ST3A1Q9Y663 406 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 TCAPO15273 167 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 TRAF3IP2O43734 574 aaPredicted RBP9.84□□□□□ -0.83
LDLR-208ENST00000558518 GDF9O60383 454 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 NPBWR2P48146 333 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 CST9LP1Q5W188 147 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 ZNF787Q6DD87 383 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 ZNF66Q6ZN08 573 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 GAPTQ8N292 157 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 IL22RA1Q8N6P7 574 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 LFNGQ8NES3 379 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 ABHD5Q8WTS1 349 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 GINS3Q9BRX5 216 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 AKIRIN1Q9H9L7 192 aaPredicted RBP9.84□□□□□ -0.83
LDLR-208ENST00000558518 OBP2AQ9NY56 170 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 KCNS2Q9ULS6 477 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 ZNF318Q5VUA4 2279 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 NCOR1O75376 2440 aa9.84□□□□□ -0.83
LDLR-208ENST00000558518 ZNF816-ZNF321PA0A0X1KG74 233 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 ZNF705FA8MVS1 300 aaPredicted RBP9.83□□□□□ -0.84
LDLR-208ENST00000558518 ZNF705DP0CH99 300 aaPredicted RBP9.83□□□□□ -0.84
LDLR-208ENST00000558518 ZNF705BP0CI00 300 aaPredicted RBP9.83□□□□□ -0.84
LDLR-208ENST00000558518 DEFA4P12838 97 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 IGFBP7Q16270 282 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 CCDC71LQ8N9Z2 235 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 TSTD1Q8NFU3 115 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 ST8SIA1Q92185 356 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 RDH5Q92781 318 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 BOD1Q96IK1 185 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 TUBD1Q9UJT1 453 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 EML6Q6ZMW3 1958 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 A0A1B0GX78 115 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 K7N7A8 449 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 HIST1H1BP16401 226 aaKnown RBP9.83□□□□□ -0.84
LDLR-208ENST00000558518 IL2RGP31785 369 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 GRB2P62993 217 aaKnown RBP9.83□□□□□ -0.84
LDLR-208ENST00000558518 PMP22Q01453 160 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 VASH2Q86V25 355 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 HIST3H2BBQ8N257 126 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 COMMD1Q8N668 190 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 FSCN3Q9NQT6 498 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 CCL28Q9NRJ3 127 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 ROS1P08922 2347 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 TRAPPC6AO75865 159 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 HOXC4P09017 264 aaPredicted RBP9.83□□□□□ -0.84
LDLR-208ENST00000558518 SCTP09683 121 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 CD33P20138 364 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 CD38P28907 300 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 ICAM4Q14773 271 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 SPANXN5Q5MJ07 72 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 SPTSSAQ969W0 71 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 OR6C1Q96RD1 312 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 MOB1AQ9H8S9 216 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 IL36RNQ9UBH0 155 aa9.83□□□□□ -0.84
LDLR-208ENST00000558518 FOXD3Q9UJU5 478 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms