RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CD82P27701 267 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 BRS3P32247 399 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 GNALP38405 381 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 TNFSF10P50591 281 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 TMEM50BP56557 158 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 RPL27P61353 136 aaKnown RBP9.48□□□□□ -0.89
USP3-206ENST00000558157 EGR4Q05215 589 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 KIF26BQ2KJY2 2108 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 RIPPLY2Q5TAB7 128 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 FAM90A2PQ658T7 463 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 PIP4P1Q86T03 277 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 ZNF519Q8TB69 540 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 C22orf15Q8WYQ4 148 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 BOD1Q96IK1 185 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 VSTM2LQ96N03 204 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 WFIKKN1Q96NZ8 548 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 SDF2L1Q9HCN8 221 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 FKBP11Q9NYL4 201 aa9.48□□□□□ -0.89
USP3-206ENST00000558157 CISD1Q9NZ45 108 aaKnown RBP9.48□□□□□ -0.89
USP3-206ENST00000558157 SERPINE3A8MV23 424 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 SOCS1O15524 211 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 EFNA3P52797 238 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 EWSR1Q01844 656 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP3-206ENST00000558157 EIF3IQ13347 325 aaKnown RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 PMS2P11Q13670 270 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP3-206ENST00000558157 PRSS58Q8IYP2 241 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 FAM89BQ8N5H3 189 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 ZFP62Q8NB50 900 aaPredicted RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 ADPRHL1Q8NDY3 354 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 TSLPQ969D9 159 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 IMMP2LQ96T52 175 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 HSF4Q9ULV5 492 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 MRPS28Q9Y2Q9 187 aaKnown RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 POLR3KQ9Y2Y1 108 aaPredicted RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 SLC16A7O60669 478 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 RAD51DO75771 328 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 MPIG6BO95866 241 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 BGLAPP02818 100 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 IL6RP08887 468 aaPredicted RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 TMEM225BP0DP42 221 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 RPL29P47914 159 aaKnown RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 FOXL2P58012 376 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 RPP30P78346 268 aaKnown RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 IL11RAQ14626 422 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 NKAIN1Q4KMZ8 207 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 CDCP2Q5VXM1 449 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 GLIPR1L1Q6UWM5 242 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 FBXW12Q6X9E4 464 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 ABHD14BQ96IU4 210 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 C1orf147Q96MC9 270 aaPredicted RBP9.47□□□□□ -0.89
USP3-206ENST00000558157 DGAT2Q96PD7 388 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 MIEN1Q9BRT3 115 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 NAGKQ9UJ70 344 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 PADI1Q9ULC6 663 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 LOXL2Q9Y4K0 774 aa9.47□□□□□ -0.89
USP3-206ENST00000558157 B4E171 279 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 P2RY10O00398 339 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 SDCBPO00560 298 aaPredicted RBP9.46□□□□□ -0.89
USP3-206ENST00000558157 MT-ATP6P00846 226 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 IGHMP01871 453 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 PFN1P07737 140 aaKnown RBP9.46□□□□□ -0.89
USP3-206ENST00000558157 CDKN1BP46527 198 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 MTCP1P56278 107 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 HIST1H3AP68431 136 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 TMEM187Q14656 261 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 TRIP6Q15654 476 aaKnown RBP9.46□□□□□ -0.89
USP3-206ENST00000558157 COL5A1-AS1Q5SY13 56 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 NCR3LG1Q68D85 454 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 DHRS13Q6UX07 377 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 ZNF66Q6ZN08 573 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 MARCH3Q86UD3 253 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 H1FOOQ8IZA3 346 aaPredicted RBP9.46□□□□□ -0.89
USP3-206ENST00000558157 GBGT1Q8N5D6 347 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 OR2C3Q8N628 320 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 DEFB124Q8NES8 71 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 OR4N2Q8NGD1 307 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 ARHGAP5-AS1Q96IT6 56 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 FAAP24Q9BTP7 215 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 ST6GALNAC5Q9BVH7 336 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 OR10A2Q9H208 303 aa9.46□□□□□ -0.89
USP3-206ENST00000558157 HRKO00198 91 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 LMX1BO60663 402 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 HPRT1P00492 218 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 IDH3GP51553 393 aaPredicted RBP9.46□□□□□ -0.9
USP3-206ENST00000558157 SOX8P57073 446 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 RBX1P62877 108 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 VAMP2P63027 116 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 SHISA6Q6ZSJ9 500 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 CENPVQ7Z7K6 275 aaPredicted RBP9.46□□□□□ -0.9
USP3-206ENST00000558157 PTPMT1Q8WUK0 201 aaPredicted RBP9.46□□□□□ -0.9
USP3-206ENST00000558157 C18orf12Q96KH6 178 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 STRADBQ9C0K7 418 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 TXNIPQ9H3M7 391 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 NAA60Q9H7X0 242 aa9.46□□□□□ -0.9
USP3-206ENST00000558157 EP300Q09472 2414 aaPredicted RBP9.46□□□□□ -0.9
USP3-206ENST00000558157 IGKV3D-11A0A0A0MRZ8 115 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 SIAH2O43255 324 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 SCGB1D1O95968 90 aa9.45□□□□□ -0.9
USP3-206ENST00000558157 ZNF823P16415 610 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms