RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MT-ND4LP03901 98 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 UMODP07911 640 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 SELEP16581 610 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 PMP22Q01453 160 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 PNLIPRP3Q17RR3 467 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 SLC23A3Q6PIS1 610 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 C17orf82Q86X59 251 aaPredicted RBP12.93□□□□□ -0.34
CUX1-215ENST00000556210 CUL9Q8IWT3 2517 aa12.93□□□□□ -0.34
CUX1-215ENST00000556210 IGKV1D-8A0A087WSZ0 117 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 C7orf77A4D0Y5 90 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 ZFP92A6NM28 416 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 MSTNO14793 375 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 SOX15O60248 233 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 NGFP01138 241 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 IGFBP3P17936 291 aaPredicted RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 ETV3LQ6ZN32 361 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 LHFPL2Q6ZUX7 228 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 TMEM123Q8N131 208 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 INTS12Q96CB8 462 aaKnown RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 ZNF251Q9BRH9 671 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 MRPL13Q9BYD1 178 aaKnown RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 UNKLQ9H9P5 680 aaKnown RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 IL17BQ9UHF5 180 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 A0A0A6YYD4 124 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 TMEM14DPA8MWL7 114 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 GPR37O15354 613 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 AADACP22760 399 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 TAGLN2P37802 199 aaKnown RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 ELLP55199 621 aaPredicted RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 MLF1P58340 268 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 TMEM38BQ9NVV0 291 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 GPR132Q9UNW8 380 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 PCNX2A6NKB5 2137 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 CDRT15L2A8MXV6 281 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 CSRP2Q16527 193 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 DHRS7BQ6IAN0 325 aaPredicted RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 LCN15Q6UWW0 184 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 TMEM105Q8N8V8 129 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 GHRLQ9UBU3 117 aa12.92□□□□□ -0.34
CUX1-215ENST00000556210 ERRFI1Q9UJM3 462 aaPredicted RBP12.92□□□□□ -0.34
CUX1-215ENST00000556210 LPAR6P43657 344 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 FHITP49789 147 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 P2RY4P51582 365 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 FUT6P51993 359 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 NHLH2Q02577 135 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 SPEM2Q0P670 501 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 SSX9Q7RTT3 188 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 HOGA1Q86XE5 327 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 ZDHHC23Q8IYP9 409 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 TRIB1Q96RU8 372 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 NCOA6Q14686 2063 aaPredicted RBP12.91□□□□□ -0.34
CUX1-215ENST00000556210 CD74P04233 296 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 ANOS1P23352 680 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 ENDOGQ14249 297 aaKnown RBP12.91□□□□□ -0.34
CUX1-215ENST00000556210 OR10J5Q8NHC4 309 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 SPSB1Q96BD6 273 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 OR2H1Q9GZK4 316 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 GPR35Q9HC97 309 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 KCNIP1Q9NZI2 227 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 DNAJB11Q9UBS4 358 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 ZNF107Q9UII5 783 aaPredicted RBP12.91□□□□□ -0.34
CUX1-215ENST00000556210 BCL3P20749 454 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 NAAAQ02083 359 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 TGFBR3Q03167 851 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 C9orf152Q5JTZ5 239 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 C15orf54Q8N8G6 183 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 OIT3Q8WWZ8 545 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 SLC2A9Q9NRM0 540 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 RCC2Q9P258 522 aaKnown RBP12.91□□□□□ -0.34
CUX1-215ENST00000556210 TRBV23-1A0A0A0MS06 115 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 LINC00587B1AMM8 73 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 KLRC4-KLRK1H3BQV0 150 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 TESK1Q15569 626 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 SPANXN5Q5MJ07 72 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 RTL6Q6ICC9 239 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 HIST2H3AQ71DI3 136 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 MYPOPQ86VE0 399 aaPredicted RBP12.91□□□□□ -0.34
CUX1-215ENST00000556210 DEFB108BQ8NET1 73 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 OR1J1Q8NGS3 322 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 RNF166Q96A37 237 aaPredicted RBP12.91□□□□□ -0.34
CUX1-215ENST00000556210 SPIN2AQ99865 258 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 SPIN2BQ9BPZ2 258 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 STARD10Q9Y365 291 aa12.91□□□□□ -0.34
CUX1-215ENST00000556210 NDUFA2O43678 99 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 CLDN1O95832 211 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 SERPINA7P05543 415 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 SMIM6P0DI80 62 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 FOXG1P55316 489 aaPredicted RBP12.9□□□□□ -0.34
CUX1-215ENST00000556210 WDR5BQ86VZ2 330 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 SNIP1Q8TAD8 396 aaKnown RBP12.9□□□□□ -0.34
CUX1-215ENST00000556210 FGFBP3Q8TAT2 258 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 KCNE4Q8WWG9 221 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 DEFB108AA8MXU0 73 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 ADAM20O43506 726 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 ZNF735P0CB33 412 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 PTGER4P35408 488 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 SPINK9Q5DT21 86 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 OR10AD1Q8NGE0 317 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 GPR27Q9NS67 375 aa12.9□□□□□ -0.34
CUX1-215ENST00000556210 CACNA1BQ00975 2339 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms