RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 SPP1P10451 314 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 RPL31P62899 125 aaKnown RBP7.21□□□□□ -1.26
SYNE2-220ENST00000555612 CCL19Q99731 98 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 SCNM1Q9BWG6 230 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 LRRC37AA6NMS7 1700 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 TRIOBPQ9H2D6 2365 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 B3GALNT1O75752 331 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 HOXA4Q00056 320 aaPredicted RBP7.21□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF239Q16600 458 aaKnown RBP7.21□□□□□ -1.26
SYNE2-220ENST00000555612 FFAR4Q5NUL3 377 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF485Q8NCK3 441 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 OR5M8Q8NGP6 311 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 FAM103A1Q9BTL3 118 aaKnown RBP7.21□□□□□ -1.26
SYNE2-220ENST00000555612 WDR13Q9H1Z4 485 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 OR51I2Q9H344 312 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 DNPH1O43598 174 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 SMPD2O60906 423 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 FOSL1P15407 271 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 NSUN5P2Q63ZY6 315 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 PRSS50Q9UI38 385 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 KPTNQ9Y664 436 aa7.21□□□□□ -1.26
SYNE2-220ENST00000555612 PYCARD-AS1I3L0S3 204 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 CEACAM1P13688 526 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 TMEM105Q8N8V8 129 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 CA10Q9NS85 328 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 EXOGQ9Y2C4 368 aaKnown RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 SF3B6Q9Y3B4 125 aaKnown RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 GZMHP20718 246 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 AESQ08117 197 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 ENDOGQ14249 297 aaKnown RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 DOLPP1Q86YN1 238 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 LSMEM1Q8N8F7 131 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 FLYWCH2Q96CP2 140 aaKnown RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF764Q96H86 408 aaPredicted RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 ANGPTL4Q9BY76 406 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 RNF115Q9Y4L5 304 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 TPRP12270 2363 aaKnown RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 NRXN2Q9P2S2 1712 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 TMEM210A6NLX4 147 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 PLPP2O43688 288 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 TIAL1Q01085 375 aaKnown RBP eCLIP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF770Q6IQ21 691 aaPredicted RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 CCDC144NLQ6NUI1 221 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 OR10A7Q8NGE5 316 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 HARBI1Q96MB7 349 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 ZNF488Q96MN9 340 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 SLC52A3Q9NQ40 469 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 SLC17A5Q9NRA2 495 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 CTAG2O75638 210 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 IGHA1P01876 353 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 IGHA2P01877 340 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 PAX5Q02548 391 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 OR4D11Q8NGI4 311 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 LINC01560Q8TB33 94 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 RASL12Q9NYN1 266 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 TRDCB7Z8K6 153 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 TMEM127O75204 238 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 LALBAP00709 142 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 IGKV1D-16P01601 117 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 IL11P20809 199 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 COL10A1Q03692 680 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 RBM14Q96PK6 669 aaKnown RBP7.2□□□□□ -1.26
SYNE2-220ENST00000555612 WIPI2Q9Y4P8 454 aa7.2□□□□□ -1.26
SYNE2-220ENST00000555612 TSTD3H0UI37 97 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 UCP2P55851 309 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 GUCA2BQ16661 112 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 RELL2Q8NC24 303 aaPredicted RBP7.19□□□□□ -1.26
SYNE2-220ENST00000555612 WNT2BQ93097 391 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 LINC00052Q96N35 136 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 OR2V2Q96R30 315 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 DIRC2Q96SL1 478 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 P2RX4Q99571 388 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 RAB33BQ9H082 229 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 SLC7A10Q9NS82 523 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 RAXQ9Y2V3 346 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 TMED3Q9Y3Q3 217 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 COL11A2P13942 1736 aaPredicted RBP7.19□□□□□ -1.26
SYNE2-220ENST00000555612 CD37P11049 281 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 COX6A1P12074 109 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 MMP15P51511 669 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 TEX29Q8N6K0 151 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 FDCSPQ8NFU4 85 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 WDR89Q96FK6 387 aaPredicted RBP7.19□□□□□ -1.26
SYNE2-220ENST00000555612 MS4A3Q96HJ5 214 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 RYDENQ9NUL5 291 aaKnown RBP7.19□□□□□ -1.26
SYNE2-220ENST00000555612 IGHV3-21A0A0B4J1V1 117 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 RAB19A4D1S5 217 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 SNRPGP15A8MWD9 76 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 CDK2AP1O14519 115 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 OR5AC1P0C628 307 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 ERVFRD-1P60508 538 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 ERVFC1-1P60608 527 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 GVQW1Q8N7I0 195 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 ITLN1Q8WWA0 313 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 WDR61Q9GZS3 305 aaKnown RBP7.19□□□□□ -1.26
SYNE2-220ENST00000555612 NAA60Q9H7X0 242 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 TRPM6Q9BX84 2022 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 TCAPO15273 167 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 ALX3O95076 343 aa7.19□□□□□ -1.26
SYNE2-220ENST00000555612 DHRS7BQ6IAN0 325 aaPredicted RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms